Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22710 245 / 1e-78 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT5G06170 235 / 1e-74 ATSUC9 sucrose-proton symporter 9 (.1) AT1G66570 232 / 2e-74 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT1G71880 233 / 7e-74 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 233 / 9e-74 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT2G14670 225 / 8e-71 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 222 / 8e-70 ATSUC6 sucrose-proton symporter 6 (.1) AT1G09960 216 / 2e-67 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 192 / 1e-57 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007702 [exp] 281 / 1e-92 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10017910 [exp] 247 / 5e-79 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 245 / 5e-78 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028614 [exp] 230 / 1e-72 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 228 / 9e-72 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 215 / 2e-66 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 213 / 8e-66 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10032815 [exp] 212 / 1e-65 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10030492 [exp] 177 / 2e-51 AT2G02860 863 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085800 [exp] 248 / 4e-79 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 245 / 3e-78 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 215 / 8e-67 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 190 / 1e-56 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 186 / 4e-55 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10022633 pacid=23178560 polypeptide=Lus10022633 locus=Lus10022633.g ID=Lus10022633.BGIv1.0 annot-version=v1.0 ATGGGAGGAAGTGTGATGGTTTTTCCGCCGTCGGCAGTTCCGGCTCCGAGTCCGGTGACGAAAATCCTCGCCGTCGCTTCCATTGCCGCCGGAATCCAGT TCGGGTGGGCCCTCCAGTTGTCCCTCATGACTCCCTACGTCCAGCTCCTAGGAATTCCCCACATGTGGGCCGCAATCATTTGGCTATGTGGGCCCATTTC GGGGATGGTGGTTCAGCCCGTGGTTGGTTACTTCAGCGACCGGTCCACCAGTAGGTTCGGTCGCCGTAGCCCGTTCATCCTGGGAGGCACAGTCTTCGTC GTCGTAGCCATTTCCTTGATCGGTTTCGCCGCCGACATTGGCCATTACTACGGCGACTCCCTCGAACAGGGAAAACCTAAGGTCAGGGCTATCGCTGTTT TTATCTTGGGGTTCTGGATCCTCGATGTTTCCAACAATGTTCTTCAGGCACCGTGCCGGGCATTGCTCGGAGACCTCTCCGGCGACAACCCGCGGCTCAT CCGCTTCTCGAACTCTCTGTTTTCCTTCTTCATGGGGATCGGAAACATCTTAGGATTGTGGAAGGCGGCATCGACTGAGTTTGTCACAATCAGTATGGAC GGATCTGTTGTACACCCAAATAGCGTGGCTGCAGCTGGTGGTGTTCTACGCGACTCACATGGCAAGGTTCTACACTCGTTCACGGCAAACGATTACAAGG GCGGAAATGTGTGGGGCGATTTTTGGATTGCGTGTAGTTTGAGATCACAGCTATCATAA
AA sequence Show only first row Show all	>Lus10022633 pacid=23178560 polypeptide=Lus10022633 locus=Lus10022633.g ID=Lus10022633.BGIv1.0 annot-version=v1.0 MGGSVMVFPPSAVPAPSPVTKILAVASIAAGIQFGWALQLSLMTPYVQLLGIPHMWAAIIWLCGPISGMVVQPVVGYFSDRSTSRFGRRSPFILGGTVFV VVAISLIGFAADIGHYYGDSLEQGKPKVRAIAVFILGFWILDVSNNVLQAPCRALLGDLSGDNPRLIRFSNSLFSFFMGIGNILGLWKAASTEFVTISMD GSVVHPNSVAAAGGVLRDSHGKVLHSFTANDYKGGNVWGDFWIACSLRSQLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10022633 [exp]	0	1
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004538 [exp]	2.0	0.7875
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	7.1	0.7304
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	7.7	0.6846
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10030729 [exp]	12.4	0.6510
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	17.0	0.6701
					Lus10042586 [exp]	23.3	0.7727
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	48.2	0.6201
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10003990 [exp]	54.7	0.6363
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	59.7	0.6233
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10007784 [exp]	65.7	0.6279

Compare expression of checked genes

Lus10022633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.