Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003334 [exp] 152 / 4e-46 AT1G61110 50 / 1e-07 NAC domain containing protein 25 (.1) Lus10031937 [exp] 93 / 8e-22 AT1G77450 67 / 1e-12 NAC domain containing protein 32 (.1) Lus10024006 [exp] 50 / 1e-06 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10010294 [exp] 49 / 2e-06 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10008200 [exp] 45 / 2e-05 ND 43 / 6e-05 Lus10033676 [exp] 45 / 4e-05 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10025078 [exp] 44 / 9e-05 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10004531 [exp] 42 / 0.0002 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10007204 [exp] 42 / 0.0003 ND 43 / 2e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 56 / 1e-08 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 47 / 6e-06 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.019G063000 [exp] 45 / 1e-05 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G028700 [exp] 41 / 0.0006 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022637 pacid=23178559 polypeptide=Lus10022637 locus=Lus10022637.g ID=Lus10022637.BGIv1.0 annot-version=v1.0 ATGAAGTATCATCATCGCTCTCTGCAAAACCGTGCACTTCCGAATCATCCCCTCCGACGAAGAGCTCGGAGTCGGTTACCTCACCCCCAAGCTCCGCCAA TTCCCTCTCCCCTCCTCCGGCCACATCACGGCCAATTCGAGCCGTGGGAGATCTGGTCGAAATTCCGCTGTAGCGACGATGACGATGGTGAAGAAGGAGA AGAGACGGCCAATGACATGTACTGCTTCACGCCGTTGAAGAAGAGGACGGAAACCGGGAAAAGATACGAACTCTCCGTGGGAACTAACGGTGGGACGTGG AATTCGGAGGATGGACGGTGTTTCGGTCGAAGCAAAGGCGGCGTTATAACGTGGGAGAAGAAGAGGTTCAAGTACTTAACGAGAAGCGGTACGGAGAAGA AGAGGAAGCGGAAGAATAATGGTGGGGCCGTCGACGTTGACACGTCACCAAGCGGAGGGGGAGGATCAGGGGTAGTTTGGATAATGCATGAGTACAGATT GACCGATAAAGGGATACCTTTTCTTGGGATTGATCGGAGGGCTGTGAATAGCTGCGCCCTGTGCCAGCTTAGGAGGAAGAAGGAGAGGAGTAAAGGAAAG GGTAGTGACGGAATTTCTGTTGATGTGGTGGAAGAAGTAGAAGAGGATGTGGTTGATGATGATCAATCAATGGCGGTTGTGGATTCGATGATTTCGGAAA CAACACTAGTACTAGCACTCTTGTTAATGTTGATGGTACTGGTACTAGTACTACTCAAGTTGCTACTGATGTTGGTACTAGTTATGTTGGTGGTGGTTGT GGTGGTTGTCTGA
AA sequence Show only first row Show all	>Lus10022637 pacid=23178559 polypeptide=Lus10022637 locus=Lus10022637.g ID=Lus10022637.BGIv1.0 annot-version=v1.0 MKYHHRSLQNRALPNHPLRRRARSRLPHPQAPPIPSPLLRPHHGQFEPWEIWSKFRCSDDDDGEEGEETANDMYCFTPLKKRTETGKRYELSVGTNGGTW NSEDGRCFGRSKGGVITWEKKRFKYLTRSGTEKKRKRKNNGGAVDVDTSPSGGGGSGVVWIMHEYRLTDKGIPFLGIDRRAVNSCALCQLRRKKERSKGK GSDGISVDVVEEVEEDVVDDDQSMAVVDSMISETTLVLALLLMLMVLVLVLLKLLLMLVLVMLVVVVVVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022637 [exp]	0	1
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	1.4	0.8037
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	17.2	0.7719
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	22.1	0.7989
AT2G05920			Subtilase family protein (.1)		Lus10006689 [exp]	23.9	0.7853
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	33.8	0.7514
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	38.8	0.7572
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	40.0	0.7475
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	42.6	0.7254
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	44.3	0.7564
					Lus10002237 [exp]	44.7	0.7240

Compare expression of checked genes

Lus10022637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.