Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22800 1353 / 0 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) AT1G50200 451 / 5e-143 ACD, ALATS Alanyl-tRNA synthetase (.1.2) AT1G49930 54 / 2e-08 unknown protein AT3G16565 43 / 0.0005 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003337 [exp] 984 / 0 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10010210 [exp] 438 / 3e-138 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2) Lus10017408 [exp] 439 / 1e-131 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141300 [exp] 1443 / 0 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Potri.005G094300 [exp] 444 / 6e-140 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2) Potri.007G070250 [exp] 48 / 2e-05 AT1G50200 266 / 1e-82 Alanyl-tRNA synthetase (.1.2) Potri.010G024900 [exp] 45 / 0.0002 AT3G16565 338 / 2e-118 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02272 [flax] [poplar] DHHA1 DHHA1 domain CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain CL0040 [flax] [poplar] tRNA_synt_II PF01411 [flax] [poplar] tRNA-synt_2c tRNA synthetases class II (A)
Representative CDS sequence Show only first row Show all	>Lus10022640 pacid=23178663 polypeptide=Lus10022640 locus=Lus10022640.g ID=Lus10022640.BGIv1.0 annot-version=v1.0 ATGGCTGGCGGTCTCAAACTCTACAGCACCATACATGGCGGGAAATCTCTCTACCCATTTCCCGCCGCCTCCTCTTCTTCTTCAACCTTACTCGCAAAAC CCATCTCCCCTGCATCAGTTCAGCCAGTGACTGACGAGGGGAAGAAATGTGAGGAGAATTCGGTTAGTGGAGATTCGATTCGACGAAGGTTTATCGAATT CTACTCTTCCCGTGGCCATAAGATTCTCCCAAGTTCATCTCTTGTCCCTGACGATCCAACTGTTCTGCTCACCATAGCAGGGATGCTTCAGTTCAAACCT ATCTTCCTTGGCAAGGCCCCGAGGCAGGTGCTTCGAGCAACGACTGCACAAAGGTGCATTCGAACGAACGACATAGAGAACGTTGGCCGAACATCTAGGC ATCAGACTTTCTTCGAGATGCTTGGGAATTTCAGCTTTGGAGATTACTTCAAGAGGGAAGCCATAAGATGGGCTTGGGAGCTTTCTACAAAGGAATTTGG GCTTCCAGCTGACAAAGTGTGGATTAGTGTATACGAAGACGATGATGAAACATTCAAGATATGGCATGAGGAGATCGGTGTCCCTGTCGAGCGGATACTA AGAATGGGTGAAGAAGACAACTTCTGGACGAGTGGTCCAACAGGTCCTTGCGGTCCATGTACTGAGCTTTACTATGATTTCCATCCTGAAAGGGGTAACA ATGAAGTGGATCTTGGAGATGACAGTAGGTTCATAGAGTTCTACAATCTAGTGTTCATGCAGTACAATAGAATGGATGATGGATCGCTTGAACCGTTAAA ACAACAAAATATAGATACTGGCCTTGGTCTAGAACGGTTGGCTCGCATCCTCCAAAAGGTTCCGAACAATTACGAGACCGACTTGATCTATCCCATAGTA CAAAAGGCATCAAAGTTGGCAAACGTTCCATACCATGGTGCTACTGATGAGAAGAAAATGCAACTTAAAATTATAGGAGATCATATGCGTGCAATTGTAT ACCTGCTATCAGATGGCGTTCTCCCTTCGAATGTCGGTAGGGGTTACGTGGTTCGTCGCCTCATACGAAGGGCTGTCCGGATAGGCAGGTTGCTTGGTAT AAAGGGAGATTGTGAAGGTAATATTGAAGGAGCATTTTTACCAGCCATTGCAGAAACAGTCATGGAAATAAGCACTTCTATCGATCCCGAAGTGAAGGAG AAGGCATCTCGCATTATCGGAGAGCTGCGAAGAGAAGAGCTTCGCTTTGTACTAACTCTGGAGAGAGGAGAGAAGCTACTTGAACAGAAGTTAGCAGAAG CATTATCAAGCGCCGAACATAGTGGGGATTCACCTTGCTTGACTGGAAATGATGTGTTCCTGTTATACGACACTTTTGGATTCCCAGTTGAGATCACTGC AGAAGTTGCAGAAGAGAAAGGCATAGAGATAGACATGGAAGGTTTCTATGTTGAGATGGAGAACCAAAGGCGCCAGTCTCAGGCAGCACACAATGTTGTT AAACTTAATGTTGAAGACGGCGGGGATCTTGCTGAAATGGTTGCTGATACGGAGATTCTGGGATACGATACCCTTTCGACAAGGGCAATAGTGCAGAGCT TGTTGGTGAATGGGAAGCCGGTGCTGCAGGTTTCTAAAGGGAGTGAAGTAGAAGTTCTGCTCAACAGGACACCATTTTATGCCGAGTCAGGTGGTCAGAT TGGTGATCATGGCTATCTCTATGTAACAGCAGAGCAAAGTGAAACCACAGCAGTTGTACAGATTGAAGATGTCAAAAAATCTCTTGGTAGTGTATTTGTT CACAAGGGGACCATCAAAGAAGGCGTCTTGGAAGTTGGCAAAGAAGTGGAAGCCACTGTAGATTCAAAACTAAGGCAGCGAGCTAAGGTTCATCATACTG CCACCCACTTGCTACAATCTGCACTGAAGAAAGTTATTGGTGAGGAGACATCACAAGCTGGTTCCTTGGTAGCTTTTGATCGTCTCAGATTCGATTTCAA CTTTCATCGGCCACTAGTTGATAGCGAGCTGGAAGAAATCGAGGGATTGATAAATGGATGGATTGGTGATGCAACGCTGCTTCAAACTAAAGTCATGCCC TTGACTGATGCTAAAAGGGTTGGTGCCACTGCCATGTTTGGAGAAAAATATGGAGACGAGGTGCGTGTTGTGGAGGTTCCTGGTGTATCTATGGAACTCT GTGGTGGAACTCATGTCAACAACACTTCCGAAATTCGCGCCTTCAAGATCATATCAGAACAGGGAATTGCGTCGGGAATCAGGCGAATAGAAGCTGTAGC TGGTGAAGCTTACATAGAGTATATCAATGGAAGAGATTCCCAGTTGAGACGGCTATGTTCCACTCTCAAAGTGAAAGCGGAAGAAGTTTCAACTAGGGTA GATAACCTGTTAGAAGAACTGAGAACCGCAAGAAACGAAGCTTCAGGATTGCGTTCAAAAGCTGCTGTGTACAAAGCATCCATTATCTCAAGCAATGCAG TATCCGTGGGAGATTCAACATCAATCAGGGTTCTAGTTGACAACATGGACGACGTTGATGCCGATTCACTAAAAAGCGCAGCGGAATACTTGGTTGAAAC GCTGCAAGAGCCAGCAGCCGTGGTCTTGGGATCATCTCCCGGTGAAGGGAAGGTGAGCTTAGTAGCAGCATTCTCTCCAGGAGTTGTGAAGTTAGGTGTT CAGGCAGGGAAGTTCATAGGCCCTATCGCGAAATTGTGCGGTGGAGGTGGCGGTGGACGGCCTAACTTCGCTCAGGCTGGCGGGAGGAAGCCCGAGAATC TCTCGAGCGCGTTAGAGAAGGCTCGAACCGAACTTGTATCGGTTCTTGCAGAAAAGGCTGGTCAATGA
AA sequence Show only first row Show all	>Lus10022640 pacid=23178663 polypeptide=Lus10022640 locus=Lus10022640.g ID=Lus10022640.BGIv1.0 annot-version=v1.0 MAGGLKLYSTIHGGKSLYPFPAASSSSSTLLAKPISPASVQPVTDEGKKCEENSVSGDSIRRRFIEFYSSRGHKILPSSSLVPDDPTVLLTIAGMLQFKP IFLGKAPRQVLRATTAQRCIRTNDIENVGRTSRHQTFFEMLGNFSFGDYFKREAIRWAWELSTKEFGLPADKVWISVYEDDDETFKIWHEEIGVPVERIL RMGEEDNFWTSGPTGPCGPCTELYYDFHPERGNNEVDLGDDSRFIEFYNLVFMQYNRMDDGSLEPLKQQNIDTGLGLERLARILQKVPNNYETDLIYPIV QKASKLANVPYHGATDEKKMQLKIIGDHMRAIVYLLSDGVLPSNVGRGYVVRRLIRRAVRIGRLLGIKGDCEGNIEGAFLPAIAETVMEISTSIDPEVKE KASRIIGELRREELRFVLTLERGEKLLEQKLAEALSSAEHSGDSPCLTGNDVFLLYDTFGFPVEITAEVAEEKGIEIDMEGFYVEMENQRRQSQAAHNVV KLNVEDGGDLAEMVADTEILGYDTLSTRAIVQSLLVNGKPVLQVSKGSEVEVLLNRTPFYAESGGQIGDHGYLYVTAEQSETTAVVQIEDVKKSLGSVFV HKGTIKEGVLEVGKEVEATVDSKLRQRAKVHHTATHLLQSALKKVIGEETSQAGSLVAFDRLRFDFNFHRPLVDSELEEIEGLINGWIGDATLLQTKVMP LTDAKRVGATAMFGEKYGDEVRVVEVPGVSMELCGGTHVNNTSEIRAFKIISEQGIASGIRRIEAVAGEAYIEYINGRDSQLRRLCSTLKVKAEEVSTRV DNLLEELRTARNEASGLRSKAAVYKASIISSNAVSVGDSTSIRVLVDNMDDVDADSLKSAAEYLVETLQEPAAVVLGSSPGEGKVSLVAAFSPGVVKLGV QAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSSALEKARTELVSVLAEKAGQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	0	1
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	1.0	0.9654
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	1.4	0.9635
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	1.7	0.9589
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	2.8	0.9460
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10016570 [exp]	2.8	0.9557
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	3.7	0.9475
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	3.9	0.9556
					Lus10030090 [exp]	4.2	0.9554
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	5.2	0.9458
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	5.7	0.9420

Compare expression of checked genes

Lus10022640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.