Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003340 [exp] 174 / 5e-56 AT3G50980 41 / 1e-04 dehydrin xero 1 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10022643 pacid=23178603 polypeptide=Lus10022643 locus=Lus10022643.g ID=Lus10022643.BGIv1.0 annot-version=v1.0 ATGGCGGATCAGAACCATAAGCAAAACGGGTGTGAAGTAGAAGACCAAGCCGGAGTCGGGCTATGCGGTCTCCTTTCGAAGAAGAAAGTCACCGACAACG GTAGTCAAAATGATCAAGAGAAGAATGTCATTACGAGCAGTGATGCGAAACACTGCGGACCTCTTTCTACCCTTGCCGACCACCTCCACCGCTCTGATGG TACCTCGTCAAGTGAAGAAGAAGAAGTTGAAGGAGGAGGAGGGGAGAAAAAGAGGAAGAAGAAAGGGTTGAAGGAGAAGATAAAGAAGAAGATGTCAATT GAAAAGGAAGCTGAAGTGACAATAGAGATAATGCATGAAGAAGAAGAAGAGGAGAAGAAAGGGTTCATGGAGAAGATCATGGAAAAGCTCCCACTCGACG GCCACGGGGCGAATAAGCCCGACGATGTCGAGATCAAGTCGGAAAAGGGTGGGATGTTGGACATGATCAAGGAGAGGATTCAAGGAGGGATCAATAAGGT TAACGGAGATGATCATCATGAGAGGAAGAAGGAAGATTGA
AA sequence Show only first row Show all	>Lus10022643 pacid=23178603 polypeptide=Lus10022643 locus=Lus10022643.g ID=Lus10022643.BGIv1.0 annot-version=v1.0 MADQNHKQNGCEVEDQAGVGLCGLLSKKKVTDNGSQNDQEKNVITSSDAKHCGPLSTLADHLHRSDGTSSSEEEEVEGGGGEKKRKKKGLKEKIKKKMSI EKEAEVTIEIMHEEEEEEKKGFMEKIMEKLPLDGHGANKPDDVEIKSEKGGMLDMIKERIQGGINKVNGDDHHERKKED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022643 [exp]	0	1
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10026200 [exp]	4.5	0.8785
AT1G13620		RGF2	root meristem growth factor 2,...		Lus10019202 [exp]	4.9	0.8585
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	8.9	0.8691
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	11.0	0.8723
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	11.3	0.8468
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10001912 [exp]	11.6	0.8628
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10038415 [exp]	12.3	0.8196
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	13.7	0.8596
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016659 [exp]	15.3	0.8602
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	15.5	0.8568

Compare expression of checked genes

Lus10022643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.