Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35170 225 / 5e-72 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 218 / 1e-69 unknown protein AT1G45688 140 / 8e-39 unknown protein AT5G42860 138 / 2e-38 unknown protein AT3G24600 109 / 1e-26 Late embryogenesis abundant protein, group 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003341 [exp] 377 / 1e-130 AT2G41990 221 / 4e-70 unknown protein Lus10010232 [exp] 177 / 3e-53 AT1G45688 416 / 3e-146 unknown protein Lus10009749 [exp] 163 / 3e-48 AT5G42860 256 / 2e-84 unknown protein Lus10029743 [exp] 152 / 3e-43 AT1G45688 301 / 4e-101 unknown protein Lus10035869 [exp] 143 / 4e-40 AT1G45688 219 / 3e-69 unknown protein Lus10025793 [exp] 139 / 2e-38 AT1G45688 221 / 5e-70 unknown protein Lus10034926 [exp] 125 / 3e-33 AT1G45688 182 / 5e-55 unknown protein Lus10023652 [exp] 123 / 1e-32 AT1G45688 183 / 2e-55 unknown protein Lus10010231 [exp] 71 / 3e-15 AT5G42860 84 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140600 [exp] 345 / 4e-119 AT2G41990 232 / 5e-75 unknown protein Potri.004G180900 [exp] 328 / 1e-112 AT2G41990 256 / 1e-84 unknown protein Potri.002G124600 [exp] 169 / 5e-50 AT1G45688 284 / 1e-94 unknown protein Potri.014G026800 [exp] 165 / 9e-49 AT1G45688 301 / 2e-101 unknown protein Potri.007G045000 [exp] 159 / 3e-46 AT1G45688 273 / 4e-90 unknown protein Potri.001G183600 [exp] 137 / 6e-38 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 137 / 6e-38 AT1G45688 176 / 6e-53 unknown protein Potri.006G160100 [exp] 115 / 7e-30 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.009G061300 [exp] 56 / 7e-09 AT3G08490 209 / 7e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10022644 pacid=23178502 polypeptide=Lus10022644 locus=Lus10022644.g ID=Lus10022644.BGIv1.0 annot-version=v1.0 ATGCACGCGAAGACCGATTCCGACGGGACGACGAGCGTGGATACCACGTGGGGGACGGGGGCGCCGCCCACTCGCCTGCCGGTGTACTACGTCCAGAGCC CTTCCAACCACGACGCCCTGGAGAAAATGTCGTACGACGACGGCGGGTCGACCCCCGCCGGATCTCCGCCGCACCATTACTACCACTGCTCCCCAATCCA CCACTCCCGTGAGTCCTCCAATTCCAGATTCACCGCCGCGCTTAAAAACCCAAGGAATCTCAACTCCTCCTGGAAGCACGTCCAGCTCAACGGCCACGGT GGCGGAATGGGGGATGAAGATGACGAGGAGGAGGATGAGTTTAACGGTGATGGCGGTGGGAGGAGTAACGGCGTGAGGGTTTACTTGGTTGGATTCTGTG TCTTTGTTTTGGTGTTCACTCTGTTTTGCTTGATCCTTTGGGGCGCCAGCAAGTCTTACCCGCCCAAAGTTTCCGTCAAGAGCATGGTGTTCGAGAATTT TAATGTACAAGCAGGGAATGATGAATCAGGAGTGCCAACAGACATGCTCACTTTGAACTCAACGGTCAAGATTCGCTACAGGAACCCAGGCACTTTCTTT GCCGTCCACGTCACCTCCACCCCTCTTGAGCTCTACTATTTCCAACTCAAACTAGCATCTGGCCAGATGAAGAAGTTCACGCAGTCGAGGAAGAGCGGGA GGACAGTGGCGACGGTAGTGAGTGGACACCAAGTCCCCTTGTACGGAGGGATCCCTGCCCTAGCCAATGCCTACAACAACATCAACAAGGTGGTAGTGCC ACTCAACTTGACCTTCACGTTGAGATCTAGGGCTTACATATTGGGGAGACTAGTGAAGTCAAAGTTCTATAGCAATGTCAGGTGCCGGCTCACACTCCAT GGCAGTAGGCTTGGGAAGCCTCATAACTTGACTCAATCTTGTTTCTATGATGATTGA
AA sequence Show only first row Show all	>Lus10022644 pacid=23178502 polypeptide=Lus10022644 locus=Lus10022644.g ID=Lus10022644.BGIv1.0 annot-version=v1.0 MHAKTDSDGTTSVDTTWGTGAPPTRLPVYYVQSPSNHDALEKMSYDDGGSTPAGSPPHHYYHCSPIHHSRESSNSRFTAALKNPRNLNSSWKHVQLNGHG GGMGDEDDEEEDEFNGDGGGRSNGVRVYLVGFCVFVLVFTLFCLILWGASKSYPPKVSVKSMVFENFNVQAGNDESGVPTDMLTLNSTVKIRYRNPGTFF AVHVTSTPLELYYFQLKLASGQMKKFTQSRKSGRTVATVVSGHQVPLYGGIPALANAYNNINKVVVPLNLTFTLRSRAYILGRLVKSKFYSNVRCRLTLH GSRLGKPHNLTQSCFYDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	0	1
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	2.4	0.9333
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	4.2	0.9012
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	4.2	0.9098
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	4.2	0.8956
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	5.8	0.8596
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	7.5	0.8674
					Lus10024122 [exp]	8.1	0.8776
					Lus10018463 [exp]	8.4	0.8963
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	8.5	0.8963
					Lus10035688 [exp]	9.5	0.8796

Compare expression of checked genes

Lus10022644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.