Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 1017 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G28470 870 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 853 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 850 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 769 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT3G52840 747 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 737 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G56870 731 / 0 BGAL4 beta-galactosidase 4 (.1) AT4G26140 727 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G20710 721 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003343 [exp] 1613 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10025108 [exp] 1189 / 0 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10023977 [exp] 1045 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10025110 [exp] 876 / 0 AT5G63810 851 / 0.0 beta-galactosidase 10 (.1) Lus10015625 [exp] 843 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 835 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 835 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 830 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 828 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099800 [exp] 1223 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.006G144500 [exp] 865 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 852 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 850 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 848 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 846 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 833 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 778 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.017G057900 [exp] 766 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 762 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10022645 pacid=23178587 polypeptide=Lus10022645 locus=Lus10022645.g ID=Lus10022645.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTTTTCTCCTTTTTCTTCTTTTTCTCGAGCTGCTTGTTGCTCTTCTTCTTCTTTGAAGTGGGTTCGGCGGGGAATGTGACTTACGATGGCC GATCTCTCCTCATTGATGGGCAGAGGAAGCTCTTCATTTCCGCTTCCATTCACTACCCTCGAAGTGTTCCCGCGATGTGGCCGGGGTTGGTGCAGACTGC TAAGGAAGGTGGAGTGGATGTGATTGAAACTTACGTGTTTTGGAATGGCCATGAGATTGCTCCTTCAGTTTACAACTTCGACGGGAGGTATGATCTAGTG AAGTTTGTGAAGATTGTTCAGAATGCTGGGATGCATTTGATTCTTCGTATTGGGCCTTTTGTTGCTGCTGAATGGAACTATGGGGGTGTGCCTGTTTGGT TACATTATATACCTGGAACAGTGTTTCGGACAGATAACAAGAACTTTAAGTTTTATATGCAGAGATTCATGACATACATTGTGAACCTCATGAAGAAAGA GAAGCTGTTTGCTTCTCAGGGAGCAAGTTCATCATCGCTAGACTGGGATGCTTCTTCATTGCAGGTGGAGAATGAATACGGATATTACGAGCAGTTCTAT GGAGAGGGTGGGAAGCGATACTACGGAGAAGGGGGGGAGGGATATGCCATGTGGTCGGCTCAAATGGCCGTTGCTCAAAATATCGGCGTTCCTTGGATAA TGTGCCAGCAGTTTGATGCTCCTGACCCAGTGATTGATACTTGTAATGGTTTCTACTGCGATGCATTCAAACCTATTTCTCCACACAGGCCAAAGATTTG GACAGAAAACTGGCCAGGATGGTTTCAGTTATTTGGAGCCCCCAATCCTCACAGACCAGCTCAAGATGTTGCTTATGCTGTGGCTCGATTCTTCCAGAAA GGCGGTACTGTGAATAATTATTACATGTATCATGGAGGAACAAATTTCGGCCGTACTGCTGGTGGACCATTCATTACAACTAGTTATGACTATGAGGCCC CAATCGACGAGTATGGTATGCCGAACCAGCCGAAATGGGGACACCTTAGAGATCTCCACAAAGCTATAAAGTTATGTGAGAAAATGTTGCTAACCAGCAA TTCAATCAATAGCTCCCTTGGACATTCCCAAGAGGCTGAAGTTTATGAAGATGGATCAGGAGCTTGTGTTGCCTTTCTATCTAACACAGATGACAAGAAC GACGTGACTGTCACGTTTAGGAACGCATCGTACCACTTGCCGGCTTGGTCAGTCAGCATTCTGCCTGACTGCAAAAATGAAGTGTATAATACTGCAAAGG TGACATCCCAAGCCACTGTGGTGAAAATGGTTTCTGAGAACTTGAGGCCCTCAGTGCAGTCATCAAAGAAAGACGCGAGAACTCCGAACTGGGAAGTGTT TGTGGAGAAAGCAGGCATTTGGGGAGAAGCCGACCTGGTAAAAAATGGTTTGGATGATCACATTAACACCACTAAAGATGCCAGTGATTACCTTTGGTAC ACTACAAGCTTTACCTATGGTGAAGATGAAGCCTTATTAAAGCAAGGACGATCTCCGGTTCTCTTGATCGACTCGAAGGGTCATGCTCTCCATGTTTTCG TCAATGGCCAACTTCAAGGTAGTGCATCTGGAAATGGCACGGTTTTCCCTTTCAAATACAAGAAACCCATCACTCTCAAGGCAGGGAAGAACGAAATTTC GTTACTGAGCATAACTGTCGGCCTGCCGACTGCTGGCCCTCGATACGAATGGATCCCAGCTGGACTTACCTACGTCAAGATTCAAGGGCTTAACAATGGC ACAGTAGACTTGTCAAAGAACAAATGGACTTATAAGATTGGTTTGGAAGGAGAAAAGCTTGCTATATACACACCAGGCGGTATGAACCGTGTGCACTGGG TCGCTACTCCAAATGTGCCGAAAATGCAGCCTTTGACATGGTATAAGGCTGCTGTGGAACCACCAACCGGAAATGAACCCATTGGACTAGATATGCTCAA CATGGGGAAAGGTCTAGCTTGGTTGAATGGAGAAGAAATCGGGAGATACTGGCCGAGGAAAAGCCCGAAAAACGGGAAATGTGTTGATGAATGTGATTAC AGAGGCAAGTTCATGCCGGATAAGTGTCTAACTGGATGCGGGAAACCCACACAGAGATGGTACCACATTCCTCGGTCATGGTTCAAGCCATCTGGTAACG TACTAGTGATCTTTGAAGAGAAAGGTGGCGACCCGTCAAAGATCAAGTTTTCGAAGCGAAGAACGTCGGGAGTATGCGCTGCTGTCAGTGAGGATTACCC TTCCTACAATCTTGTCCCTCAAGCTGGGAATGCAACAAGTAAAACAGCCAGTGTTCATCTCAAGTGTCCTGAAGATACTCAGATATCCGCGGTGAAATTC GCCAGCTTCGGAACCCCAAAGGGAACCTGTGGTTCGTACAAGATTGGAGATTGTCATGATCCCAACTCCATTTCTGCTGTAGAAAAGGAGTGCTTGAAGA GAAATGAATGCAGCATTGAAGTATCAGAAGAGAAGTTCATGAGTAAAGGGAGCTGCAAAGTAGGTGGTGGTGCTACTATGAAGAAGAAGCTTGCAGTAGA AGTAGTGTGTAGCTGA
AA sequence Show only first row Show all	>Lus10022645 pacid=23178587 polypeptide=Lus10022645 locus=Lus10022645.g ID=Lus10022645.BGIv1.0 annot-version=v1.0 MEKLFSFFFFFSSCLLLFFFFEVGSAGNVTYDGRSLLIDGQRKLFISASIHYPRSVPAMWPGLVQTAKEGGVDVIETYVFWNGHEIAPSVYNFDGRYDLV KFVKIVQNAGMHLILRIGPFVAAEWNYGGVPVWLHYIPGTVFRTDNKNFKFYMQRFMTYIVNLMKKEKLFASQGASSSSLDWDASSLQVENEYGYYEQFY GEGGKRYYGEGGEGYAMWSAQMAVAQNIGVPWIMCQQFDAPDPVIDTCNGFYCDAFKPISPHRPKIWTENWPGWFQLFGAPNPHRPAQDVAYAVARFFQK GGTVNNYYMYHGGTNFGRTAGGPFITTSYDYEAPIDEYGMPNQPKWGHLRDLHKAIKLCEKMLLTSNSINSSLGHSQEAEVYEDGSGACVAFLSNTDDKN DVTVTFRNASYHLPAWSVSILPDCKNEVYNTAKVTSQATVVKMVSENLRPSVQSSKKDARTPNWEVFVEKAGIWGEADLVKNGLDDHINTTKDASDYLWY TTSFTYGEDEALLKQGRSPVLLIDSKGHALHVFVNGQLQGSASGNGTVFPFKYKKPITLKAGKNEISLLSITVGLPTAGPRYEWIPAGLTYVKIQGLNNG TVDLSKNKWTYKIGLEGEKLAIYTPGGMNRVHWVATPNVPKMQPLTWYKAAVEPPTGNEPIGLDMLNMGKGLAWLNGEEIGRYWPRKSPKNGKCVDECDY RGKFMPDKCLTGCGKPTQRWYHIPRSWFKPSGNVLVIFEEKGGDPSKIKFSKRRTSGVCAAVSEDYPSYNLVPQAGNATSKTASVHLKCPEDTQISAVKF ASFGTPKGTCGSYKIGDCHDPNSISAVEKECLKRNECSIEVSEEKFMSKGSCKVGGGATMKKKLAVEVVCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	0	1
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	1.0	0.9322
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	1.4	0.9128
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	3.0	0.8744
					Lus10042511 [exp]	3.2	0.8981
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	4.2	0.9074
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	4.2	0.8467
AT4G20160			unknown protein		Lus10036249 [exp]	4.5	0.8981
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019044 [exp]	5.1	0.8570
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	5.5	0.8791
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	6.5	0.8759

Compare expression of checked genes

Lus10022645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.