Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 100 / 1e-24 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29590 93 / 4e-22 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39080 88 / 1e-20 HXXXD-type acyl-transferase family protein (.1) AT3G29635 88 / 2e-20 HXXXD-type acyl-transferase family protein (.1) AT3G29670 87 / 4e-20 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 86 / 8e-20 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39090 84 / 5e-19 HXXXD-type acyl-transferase family protein (.1) AT3G29680 75 / 6e-16 HXXXD-type acyl-transferase family protein (.1) AT3G29720 64 / 1e-12 HXXXD-type acyl-transferase family protein (.1) AT1G03940 48 / 2e-06 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035802 [exp] 176 / 2e-52 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 173 / 1e-51 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10003344 [exp] 161 / 1e-50 AT3G29635 86 / 2e-20 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 161 / 2e-47 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10029798 [exp] 100 / 4e-27 AT3G29680 86 / 4e-20 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 105 / 2e-26 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 102 / 1e-25 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 100 / 9e-25 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 97 / 2e-23 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G120700 [exp] 115 / 2e-30 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 112 / 6e-29 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 109 / 3e-28 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 108 / 1e-27 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 104 / 2e-26 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 103 / 6e-26 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 103 / 8e-26 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 103 / 9e-26 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 103 / 9e-26 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 102 / 1e-25 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022646 pacid=23178680 polypeptide=Lus10022646 locus=Lus10022646.g ID=Lus10022646.BGIv1.0 annot-version=v1.0 ATGCCTTCCACAACGGTGGCCAAAGTCCTTGACGACGTCAAAGTGACACCGGAGCCGCCGCCGTCAAATCCACTCTTCCTCCGGCTAACCTTCTTCAACA CCATGTGGATCAAATTCCCCCCTGTCGAGTCCATGTTCCTCTACCGAGTAACCAATCTATCACCGGAATCGTTCAAATCACAACTCCTTCCTAAACTCCT CCGATCTCTTCCCTCACTCTCCACCATTTCCTCCCTCTCGCCGGCACCATCACCTGGCCGCCGACTTCCGATCGTCCTCTACACCCCGGGATACATGATT TCCGTCACTGTAGCCGAGTCGGCCGACGACTTCGACCACATCGCCGGCGACGGGGCTCGCCTGGCTTCGGATTCATTTGCTTACATACCGGAGTTCTCGG TTTCCGATGAGTCAGCGACGATTGTGTCTTTCCAGATCACTCTGTTTCCCGATGTTGGATTCTGTATCGGCGCGTCTGCTCACCATGGTTTTCTTGACGG GAGATTGCAGGCGGTTAGGAGAGGACGACGAAATCAAATTGCCGATCGTCCTCCTCCCGGAGGCGCTCACTCCGGTCTTTGA
AA sequence Show only first row Show all	>Lus10022646 pacid=23178680 polypeptide=Lus10022646 locus=Lus10022646.g ID=Lus10022646.BGIv1.0 annot-version=v1.0 MPSTTVAKVLDDVKVTPEPPPSNPLFLRLTFFNTMWIKFPPVESMFLYRVTNLSPESFKSQLLPKLLRSLPSLSTISSLSPAPSPGRRLPIVLYTPGYMI SVTVAESADDFDHIAGDGARLASDSFAYIPEFSVSDESATIVSFQITLFPDVGFCIGASAHHGFLDGRLQAVRRGRRNQIADRPPPGGAHSGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10022646 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10018526 [exp]	3.2	0.8870
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	3.7	0.9131
					Lus10033096 [exp]	5.3	0.9131
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10026935 [exp]	6.5	0.7209
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	6.5	0.9131
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	7.5	0.9131
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	8.7	0.9053
AT3G44150			unknown protein		Lus10021005 [exp]	9.2	0.8955
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	9.9	0.8945
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	10.6	0.8924

Compare expression of checked genes

Lus10022646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.