Plant FIBer expression Database

Lus10022649 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16210 239 / 1e-79 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012520
[exp]
290 / 6e-100 AT1G16210 307 / 1e-106 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G140200
[exp]
237 / 4e-79 AT1G16210 229 / 6e-76 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0114 HMG-box PF06244 Ccdc124 Coiled-coil domain-containing protein 124 /Oxs1
Representative CDS sequence
>Lus10022649 pacid=23178553 polypeptide=Lus10022649 locus=Lus10022649.g ID=Lus10022649.BGIv1.0 annot-version=v1.0
ATGCCGAAGAAGATGGGACTGAACAGCAAGGCAGAGGAGGCCAGGGCGCGGAAGAACGCGTCGGAGAGCGAGAAGAAGGATCGGGAGGCGCGCGACAAGG
AAGAGAAGTACTGGCGCGAGGCGGAAGGTCCCAAGTCCAGGGCGGCGAAGAAACGGGAGGAAGAGGAAGAGAAGCGCGCGGAGGCGGCGGTGAGGAAGGC
TGAGGGGAGGGTGAGGAAGGATGGGGCGAAGCGGCTGGCGGAGCAGGAGGAGAAGGATCTGGAGAAGTCGCTGAAGAGCAAGATGGACGCCAAGAAGGCG
AACCGGGTGGCGATCCCCGTGCCGAAGGTGACGGAGGCGGAGCTGAGAAGGAGGAAGGAGCAGGATCAGGCGGAGATGGCGAAGAAGTCGGAGGAGGTGA
AGAAGAAGCAGGCTAGGACTGCTGAAGAGGAGGAGTACGAGAGGATGGTGCTGGTTGAGAATAAGAATCGGGATGATTCCATCTTGGAGGCCAGGACTGT
GGAGGAAGCTGTAGCGAAGCTGAGTGTTGTGGAGGGGAGTAACTTGCCTGTTGATCGGCATCCTGAGAAGAGGCTCAAGGCTTCGTTTAAGGCTTTTGAA
GAAGCTGAGCTCCCTCAGCTGAAGGAAGAGAAGCCAGGACTAACGCACAACCAATACAAAGATATGATATGGAAGATGTGGAAGAAGTCTCCAGACAATC
CTCTTAACCAGGTATAG
AA sequence
>Lus10022649 pacid=23178553 polypeptide=Lus10022649 locus=Lus10022649.g ID=Lus10022649.BGIv1.0 annot-version=v1.0
MPKKMGLNSKAEEARARKNASESEKKDREARDKEEKYWREAEGPKSRAAKKREEEEEKRAEAAVRKAEGRVRKDGAKRLAEQEEKDLEKSLKSKMDAKKA
NRVAIPVPKVTEAELRRRKEQDQAEMAKKSEEVKKKQARTAEEEEYERMVLVENKNRDDSILEARTVEEAVAKLSVVEGSNLPVDRHPEKRLKASFKAFE
EAELPQLKEEKPGLTHNQYKDMIWKMWKKSPDNPLNQV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16210 unknown protein Lus10022649
[exp]
0 1
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Lus10025406
[exp]
1.0 0.9089
AT4G13360 ATP-dependent caseinolytic (Cl... Lus10019396
[exp]
1.7 0.9020
AT5G60800 Heavy metal transport/detoxifi... Lus10021432
[exp]
2.0 0.9005
Lus10010972
[exp]
2.0 0.9060
AT1G30480 DRT111 DNA-DAMAGE-REPAIR/TOLERATION P... Lus10038451
[exp]
3.2 0.8862
AT1G50300 TAF15 TBP-associated factor 15 (.1) Lus10042268
[exp]
4.7 0.8572
AT1G61040 VIP5 vernalization independence 5, ... Lus10018476
[exp]
5.5 0.8834
AT3G20890 RNA-binding (RRM/RBD/RNP motif... Lus10030139
[exp]
6.2 0.8387
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10005621
[exp]
6.3 0.8655
AT5G11810 unknown protein Lus10022300
[exp]
8.1 0.8493

Lus10022649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.