Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 91 / 2e-20 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G25750 66 / 6e-12 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G24040 54 / 2e-08 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT5G60060 54 / 6e-08 Protein of unknown function (DUF295) (.1) AT1G65760 54 / 7e-08 Protein of unknown function (DUF295) (.1) AT2G26160 52 / 1e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65740 52 / 2e-07 UCL1 UPWARD CURLY LEAF1, Protein of unknown function (DUF295) (.1) AT1G65770 52 / 3e-07 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT5G54330 46 / 1e-05 Protein of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012519 [exp] 128 / 3e-35 AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 125 / 7e-33 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 125 / 8e-33 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10021517 [exp] 116 / 1e-29 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022619 [exp] 49 / 2e-07 AT2G17030 44 / 3e-06 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 50 / 1e-06 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 46 / 2e-05 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10029350 [exp] 42 / 0.0002 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10035492 [exp] 42 / 0.0004 AT4G17565 63 / 1e-10 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140000 [exp] 114 / 8e-29 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 107 / 4e-26 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 87 / 4e-19 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105000 [exp] 67 / 1e-12 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 61 / 3e-10 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105100 [exp] 58 / 2e-09 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.002G015700 [exp] 48 / 3e-06 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.004G134900 [exp] 48 / 5e-06 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.012G106750 [exp] 41 / 0.0008 AT1G57790 57 / 7e-09 F-box family protein (.1) Potri.004G137700 [exp] 40 / 0.001 AT4G22165 69 / 9e-13 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10022650 pacid=23178578 polypeptide=Lus10022650 locus=Lus10022650.g ID=Lus10022650.BGIv1.0 annot-version=v1.0 ATGGCGCGCTGCTCTAAGGATCTCCCTAGCGAACTCGTGGACGGAATCTTCAGTCTCCTCGACGATGAGACCGACATCCTCCGCTCCTGTTCCGTCTGCT GCTTGTGGCGTGACTCCGCCGTCCGCAGGGCTCGTAGTTTACCAGCCGGCCACCAAGTCCTCCACAGCGACGGCATGGAGTTTCACCTCTACAAGCACTC GATCAACCTCGTCGGCGATCCGGTCAAGGCTGTTGGCTTGTCAAGGTCGCGGACCGACATCACTTTCCGTTCCTTTAGGGATGTGATTGTGCACAAGGGG GAATTGCTTGGCGTCGATATCGCCGGCAGAGTCGTGATAGTTGATAAGGATGACAACGATGGGGAGGAACTATTGATTGTGGCTGCGACCGGCAGTCCAA GATTACTCGGCAAGAAGTACTTGGTTCAGTCCATCGATGGTGAATTGTTGTTAGTCGAAAACTACCAGCGGACTAATCTGTTGGTAGCAGGTATGTTTGG TTTCCATCCCGAGGGGAAGTTAAAAGTGTTTAAGCTGAATGAAGACGAGAAAACTTGGGTAGAAGTTCAAGACTTGGGGGATAACGTGTTGTTCCTGGGC TATAATTCTGCGTTTGCTTTATCGTCATCCTCTGATCTTCATGGTAATGCGAGGAACCGTATATTTTTCACTGATAATATGAGCTGGCCGGGTGAGAATG AAATCATGGATGCATTCCAAGGTATGTATGTATTTAACTTTGCAAGTCAGAATGTGACGCCATTGACCAAGTGTCCCAGCTACTCCAAGTTGTTCTGGCC ACCTCCGGCATGGCTCTCCCTTCCGGCATATGATTACGACGATGTAAGTGTTTTAATGATGGCTAACAAGTTCCCCTCATTTGATTGGCTTTCAATGTGA
AA sequence Show only first row Show all	>Lus10022650 pacid=23178578 polypeptide=Lus10022650 locus=Lus10022650.g ID=Lus10022650.BGIv1.0 annot-version=v1.0 MARCSKDLPSELVDGIFSLLDDETDILRSCSVCCLWRDSAVRRARSLPAGHQVLHSDGMEFHLYKHSINLVGDPVKAVGLSRSRTDITFRSFRDVIVHKG ELLGVDIAGRVVIVDKDDNDGEELLIVAATGSPRLLGKKYLVQSIDGELLLVENYQRTNLLVAGMFGFHPEGKLKVFKLNEDEKTWVEVQDLGDNVLFLG YNSAFALSSSSDLHGNARNRIFFTDNMSWPGENEIMDAFQGMYVFNFASQNVTPLTKCPSYSKLFWPPPAWLSLPAYDYDDVSVLMMANKFPSFDWLSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17030			F-box family protein with a do...		Lus10022650 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	5.4	0.8253
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	6.7	0.8098
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	6.9	0.8158
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	8.0	0.8105
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	17.0	0.8157
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	22.0	0.7666
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	23.5	0.7646
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	24.4	0.7848
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	25.8	0.8004
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	28.5	0.7857

Compare expression of checked genes

Lus10022650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.