Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17020 102 / 2e-25 F-box/RNI-like superfamily protein (.1) AT1G55590 45 / 7e-06 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012518 [exp] 250 / 5e-80 AT2G17020 548 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10025093 [exp] 135 / 3e-40 AT2G17020 216 / 5e-67 F-box/RNI-like superfamily protein (.1) Lus10023988 [exp] 104 / 3e-26 AT2G17020 519 / 3e-178 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139500 [exp] 128 / 1e-34 AT2G17020 638 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.004G179571 [exp] 118 / 5e-31 AT2G17020 665 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G169800 [exp] 42 / 0.0001 AT1G55590 617 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022652 pacid=23178607 polypeptide=Lus10022652 locus=Lus10022652.g ID=Lus10022652.BGIv1.0 annot-version=v1.0 ATGCATATCGGCCCTATCCGACGATGGTGGCATCAATCCTCGAACCTATTGCTACAAGAGCTGGATCTTTCCTGCATCTACAGATTCTCCGACCGTGGGA TCTTGTCGCTCATCGGGACTAGTGTCCCGATATCTAAGCTGCGATTACGAGAGTGTCCACTCATCACTGAAGTTTCAGTGACAGCATTGGCCTCGATGGA CGGTAACTGTCTGCGCCTTTTGGATCTTCATGACATACATATCTGCATTTGGCAGAATGTATTAAGGTGGTTCGAGAAACCCTACTTTCGGAAACTTAGA TCGCTTGGAATTGGAATCACAGAGTGTGTGAATCAGGATGCCGCAGATGCCCTAGCTAGAGCCAGACCGTTCCTGCACGTGGAATGCTACGGCAACGAGC TTGGCCCGGAGCGGTGGGACAATGTTGATGGTTTGAACATTAGTATGAGGAATTCGAAGCCCTCGAAATGTGGCTTCTCGGAGAAAGAGAGTTTCACGAT GTGGACATGGTTGATGCCGAGAAACCCTGCAGGCATGCTGCTAGCATGA
AA sequence Show only first row Show all	>Lus10022652 pacid=23178607 polypeptide=Lus10022652 locus=Lus10022652.g ID=Lus10022652.BGIv1.0 annot-version=v1.0 MHIGPIRRWWHQSSNLLLQELDLSCIYRFSDRGILSLIGTSVPISKLRLRECPLITEVSVTALASMDGNCLRLLDLHDIHICIWQNVLRWFEKPYFRKLR SLGIGITECVNQDAADALARARPFLHVECYGNELGPERWDNVDGLNISMRNSKPSKCGFSEKESFTMWTWLMPRNPAGMLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	2.0	0.8785
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	2.6	0.8924
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	3.5	0.8890
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	3.9	0.8780
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	4.6	0.8809
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	5.5	0.8771
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	5.7	0.8662
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	6.5	0.8669
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	7.7	0.8626
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	7.9	0.8662

Compare expression of checked genes

Lus10022652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.