Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 673 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 666 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 608 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 279 / 3e-89 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 266 / 4e-84 Protein kinase superfamily protein (.1) AT1G62400 262 / 1e-83 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G01850 234 / 3e-73 Protein kinase superfamily protein (.1) AT5G58950 230 / 3e-69 Protein kinase superfamily protein (.1) AT5G50180 220 / 2e-67 Protein kinase superfamily protein (.1) AT3G63260 219 / 2e-66 ATMRK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012517 [exp] 973 / 0 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 842 / 0 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 830 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10041845 [exp] 644 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 518 / 4e-171 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 438 / 1e-149 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 437 / 1e-148 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 425 / 1e-146 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 422 / 6e-144 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139400 [exp] 765 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 758 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 697 / 0 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 660 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 629 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 619 / 0 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 598 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 582 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 448 / 2e-153 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 447 / 8e-153 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10022653 pacid=23178520 polypeptide=Lus10022653 locus=Lus10022653.g ID=Lus10022653.BGIv1.0 annot-version=v1.0 ATGCATAAGAGACTACTGCATTTGGCGCACGATCCAGCTAATCGGCCGGTGATGGAAGTCCGGCTAGTACAGGTTCCTCCAATTACTGATGGGAAGTGGG ATGATTCTAGTTATCCAGATCATAATAGGAGAGAACCTGCCCAAAGCAGTCGACAGAGCATACATCCACCTCCTGCCTTTGGTTCCTCTCATAATCTTGA AGCTCTTGCACTGGAAGCCGATAATTCAGGTCACTGTGGTGACCCTTCAGTGCATGCCAATTCAAATTTCTCTCGGCCCATGCATGAAATTACCTTCTCA GCCGAGGATAAGCCGAAACTGTTAAGCCAGTTGACCTCCATGCTCGCTGATGTTGGATTGAACATTCAAGAAGCACATGCTTTTTCAACAGTAGATGGTT ACTCATTGGACGTCTTTGTTGTTGATGGTTGGCCTTATGAGGAAACTGAACAACTTCGAACCGCATTGTTGAAGGAAGCATACAAAATCGAGAACCAGAC TTGGTCGAACGATCACTTTCTACCTTCCACAAGAACTCCTGAGCCAATTAGTTTCAAATGTGATCCTAATTGTTTGACAATACCTAATGACGGGATTGAT GTCTGGGAAATCGATCTTAAACAGTTGAAGTTTGAGAACATGGTAGCATCTGGATCATATGGGAATCTGTACAAAGGTACTTACTGCAGCCAGGAAGTTG CTATCAAAGTACTAAAGCCGGAACGACTAAATACAGATTTGCAGAAAGAGTTTGCCCAGGAAGTCTACATAATGAGGAAAGTTCGACATAAGAATGTTGT TCAATTCATAGGGGCATGCACCAAACCTCCAAGCTTGTGTATTGTAACAGAATTTATGTCCGGTGGGAGTGTCTATGACTATTTGCATAAACATAAGGGA GTCTTCAAGCTTCCTTCCTTACTAAAGGTAGCCATAGATGTCTCCAAAGGGATGCACTACTTGCACCAGAATAACATTATTCACCGAGATTTGAAGGCCG CAAATCTTCTCATGGATGAACATGAGGTAGTAAAAGTTGCAGATTTTGGGGTTGCAAGGGTGAAAACTCAATCCGGAGTTATGACAGCCGAAACCGGAAC CTACAGATGGATGGCTCCTGAGGTGATTGAGCACAAGCCATACGACCACAAAGCTGACATATTCAGTTTCGCAATTGTACTGTGGGAGCTATTAACTGGA AAGCTTCCTTACGAGTATTTGACACCGCTTCAAGCTGCGGTAGGCGTCGTCCAAAAGAGCTTAAGACCAACGATCCCCAAGCACACCAACCCAAAGCTGG CGGAGCTCCTTGAGAGATGCTGGCAACAGGATCCGACACTTAGACCCGACTTCTCCGAAATCATAGAGGTCCTGCAACACATAGTGAAAGAGGTCGGAGA AGATAATCAAGCCGATGCCCGCAAGGATAAGCCACACGGGTTCCTCTCAGTCCTTAGGAGAGGCAGCCACCATTGA
AA sequence Show only first row Show all	>Lus10022653 pacid=23178520 polypeptide=Lus10022653 locus=Lus10022653.g ID=Lus10022653.BGIv1.0 annot-version=v1.0 MHKRLLHLAHDPANRPVMEVRLVQVPPITDGKWDDSSYPDHNRREPAQSSRQSIHPPPAFGSSHNLEALALEADNSGHCGDPSVHANSNFSRPMHEITFS AEDKPKLLSQLTSMLADVGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETEQLRTALLKEAYKIENQTWSNDHFLPSTRTPEPISFKCDPNCLTIPNDGID VWEIDLKQLKFENMVASGSYGNLYKGTYCSQEVAIKVLKPERLNTDLQKEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKHKG VFKLPSLLKVAIDVSKGMHYLHQNNIIHRDLKAANLLMDEHEVVKVADFGVARVKTQSGVMTAETGTYRWMAPEVIEHKPYDHKADIFSFAIVLWELLTG KLPYEYLTPLQAAVGVVQKSLRPTIPKHTNPKLAELLERCWQQDPTLRPDFSEIIEVLQHIVKEVGEDNQADARKDKPHGFLSVLRRGSHH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	0	1
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	1.0	0.8369
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	4.0	0.7512
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	5.2	0.7994
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	6.3	0.8023
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	8.5	0.7658
AT4G00525			unknown protein		Lus10037852 [exp]	9.6	0.7162
AT2G02148			unknown protein		Lus10031926 [exp]	10.1	0.7319
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	10.5	0.7666
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	12.4	0.7545
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	13.3	0.7336

Compare expression of checked genes

Lus10022653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.