Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17000 686 / 0 Mechanosensitive ion channel family protein (.1) AT1G78610 497 / 1e-162 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 482 / 1e-156 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17010 472 / 4e-154 Mechanosensitive ion channel family protein (.1) AT3G14810 464 / 1e-149 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT5G12080 316 / 2e-95 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 284 / 1e-83 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 61 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025092 [exp] 966 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 911 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10042499 [exp] 769 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 769 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 702 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10012515 [exp] 583 / 0 AT1G78610 421 / 1e-141 mechanosensitive channel of small conductance-like 6 (.1) Lus10012516 [exp] 540 / 0 AT1G78610 336 / 9e-108 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 475 / 4e-161 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 386 / 4e-116 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178900 [exp] 870 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 791 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 762 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 424 / 3e-135 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G144100 [exp] 337 / 8e-103 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 332 / 6e-101 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 327 / 2e-99 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 311 / 9e-94 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10022654 pacid=23178660 polypeptide=Lus10022654 locus=Lus10022654.g ID=Lus10022654.BGIv1.0 annot-version=v1.0 ATGGAAGCTTTGAGGAAATCATTCAAATCGTATATTTCTAACAAACAGGTCCGCGGTATCTCCTCTTCAAAGTCCGACAACGAACGCCTCCCCATCCTCT CCCATTCTTCCGACGAGATGAACAACGAAAACAACATGAAGGATTACAGCGACCGCCATCACAGGGATCCGAGCTTCGGATTCTCGAGCCAATTGGCGGG TGACGAGGAAGATCCCCCCACCAGGCTGATCCACCAGTTCCTCAATCAGCAAAAACAAGGCGAGATCGCCCTCGACATGGATCTTGAAATGAACGAGCTC AAGGAACCAAACCAACGCTCCTCTATCCGCGTCTCCTTCGACCCCTCTGTCTCCGACGCCCGCGCCGACGCCGCAGCGGCCGCCGAGTCCCTCCGGCGTC GGCACAACAAGGATAATTATAACAGCAACAACCCTCCGCCTTCTCCTCCGACCGAAGCAGGAGTCATCCGATGTACATCCAACAGCTCGCTCCGGAACCA AGCGAGCTCCCTCTCTCGCCTCAAAACAAAATCCCGGCTCCTCGATCCGCCGGAGGACCGGATCGAGAGGATGTCCGGGCTGATCATGAAATCGGGGCAG CTACGGCGGTCGGGGATGCTGAGCAAATCGGGGGATGAGGATGATGACGACGAGCTGGAGCTCGAGGACTTTCCGGAGGATTTTAATACGGAGAAGATGA ACATCTCCATAATTGTGCAGTGGGTGATTCTGATAGCTATCGTTGTGTCATTAATATGCAGCTTGGTGATTCCTTCTTTGGACAGGAAGAGGATTGTTCA TCTGAAGCTGTGGAAATGGGAAGTGCTTTTGCTGGTGCTCATCTGTGGACGTTTGGTTTCCGGGTGGGGGATCCGGATCTTGGTGTACTTGGTCGAGAGG AACTTCCTTCTAAGAAAAAGGGTCCTATACTTCGTATACGGAGTAAAGAATGCGGTCCAAAACTGCCTCTGGCTTGGACTAGTCCTCGCCGCATGGATGG TCCTGTTCGACAAGAGAGTCGAGCAGGAAGCCAAAGGGAGGGTGAAAGACCTCAAGTACTTAACCAAAGTGTTGATCTGTTGCCTGGTGGCCAACTTCAT ATGGCTGCTCAAGACTCTGCTAGTCAAAGTTCTGGCCTCGTCGTTCCACGTCAGCACCTACTTCGACAGGATTCAGGAGTCGCTGTTCAACCAGTACGTG ATCGAGACGCTGTCGGGCCCGCCGTCAATCGAGCAGCTGAGGATTAGGGATGATATCGAGAGGACGGCTGCTGAGGTTGCTGTGTTGCAGAGTGCTGGGG CTCGTGTTCCGCCTGATCTTAGAGCCACTGCATTTCCAAATGTACGAACACATCCTAAACGTACTCGGTTAACTCGACACTTACTGTGTTTGACCGGTTC GAGTTCAGATATATATAACCTAACAACGGGAAACCACACAGGTCCACATAACCCTCCATCATCAAGCGGGAAAGTACCACCCGGGAAGAGCTTCAAGAGC AACAATTCGAGCATCAGCAAGCTCGAGAAGAACAAGGGGGAAGCGGCGGATTCAAAGAAGCACACGATAACGGTCGACCATCTGCACCAGCTGAACACGA AGAACGTGTCGGCGTGGAACATGAAGAGGCTGATCAACATAGTGAGACATGGATCTCTGTCGACTCTGGACGAGCAGATACTGCAGGGTGCTGCTAACCG GTTCGGTGCCGAGGAGGATGATCAGTCGAGGAAGATTAGGAGTGAGTATCAGGCTAAAGCTGCTGCAAGGAAGATCTTCTACAACGTTGCTGCTCCTAAT GCAAAGTACATATACTTGGAGGATCTGATGAGGTTCATGAGAGAAGAAGAAGCACTGAAAACTATGAGCTTCTTTGAAGGAGCATCCGAAACTAGCCGTA TCTGCAAATCTTCTCTCAAGAATTGGGTCGTGAATGCCTTCAGGGAAAGGAGGGCACTAGCCTTGACGCTCAACGACACCAAGACGGCGGTCAACAAGCT CCACCAGATGGTCAACGTCATCGTCTCGGTGATCATCGTCATCATCTCCTTGCTCCTCCTCGACATTGCTCCGACCCGACTCTTCGTCCTCTTGGGCTCG CAGATCGTCGTTGTTTCGTTCATCTTCGGTAACACCTGCAAGACCCTCTTCGAGTCCATCATCTTCTTGTTCATCGTCCATCCTTACGATGTCGGCGACC GGTGCGAGATCGGTGCCGACGGTGTTCAGTTGATAGTGGAGGAGATGAACATATTGACAACGGTGTTCTTAAGGGGAGACAATCAAAAAGTGGTGTACCA TAACAACATACTCGCCACCAAGTCCATCGGAAACTACTACCGGAGTCCCGACATGGGCGACGCCATCGAGTTCCTCATCCACGTCATGACTCCCCCCGAC AAGGTCTCCCTCATGAAACAACGCATCATCAGCTACATAGAGGCGAAGAAGGAGCACTGGTACCCAAGCCCGATGGTGATAACAAAGGACGTCGAAGGTC TACAGTCGATAAAAATGGCGGTTTGGTTCCGACACAGAATCAACCACCAAGACATGGGCGAAAAGTTCACCCGACGAGCCACCCTGGTCGAAGAGATCAT CAAGATCTTCAAAGAACTCGACATCCAGTACCGCCTCTATCCGATCGACGTCAACATTCGTCAGGTTCCCCCTTTGCCACCTTTGCCCTACTCGTCGTAG
AA sequence Show only first row Show all	>Lus10022654 pacid=23178660 polypeptide=Lus10022654 locus=Lus10022654.g ID=Lus10022654.BGIv1.0 annot-version=v1.0 MEALRKSFKSYISNKQVRGISSSKSDNERLPILSHSSDEMNNENNMKDYSDRHHRDPSFGFSSQLAGDEEDPPTRLIHQFLNQQKQGEIALDMDLEMNEL KEPNQRSSIRVSFDPSVSDARADAAAAAESLRRRHNKDNYNSNNPPPSPPTEAGVIRCTSNSSLRNQASSLSRLKTKSRLLDPPEDRIERMSGLIMKSGQ LRRSGMLSKSGDEDDDDELELEDFPEDFNTEKMNISIIVQWVILIAIVVSLICSLVIPSLDRKRIVHLKLWKWEVLLLVLICGRLVSGWGIRILVYLVER NFLLRKRVLYFVYGVKNAVQNCLWLGLVLAAWMVLFDKRVEQEAKGRVKDLKYLTKVLICCLVANFIWLLKTLLVKVLASSFHVSTYFDRIQESLFNQYV IETLSGPPSIEQLRIRDDIERTAAEVAVLQSAGARVPPDLRATAFPNVRTHPKRTRLTRHLLCLTGSSSDIYNLTTGNHTGPHNPPSSSGKVPPGKSFKS NNSSISKLEKNKGEAADSKKHTITVDHLHQLNTKNVSAWNMKRLINIVRHGSLSTLDEQILQGAANRFGAEEDDQSRKIRSEYQAKAAARKIFYNVAAPN AKYIYLEDLMRFMREEEALKTMSFFEGASETSRICKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNVIVSVIIVIISLLLLDIAPTRLFVLLGS QIVVVSFIFGNTCKTLFESIIFLFIVHPYDVGDRCEIGADGVQLIVEEMNILTTVFLRGDNQKVVYHNNILATKSIGNYYRSPDMGDAIEFLIHVMTPPD KVSLMKQRIISYIEAKKEHWYPSPMVITKDVEGLQSIKMAVWFRHRINHQDMGEKFTRRATLVEEIIKIFKELDIQYRLYPIDVNIRQVPPLPPLPYSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10022654 [exp]	0	1
					Lus10019586 [exp]	4.0	0.6588
AT3G02125			unknown protein		Lus10013196 [exp]	9.4	0.7114
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10017174 [exp]	10.1	0.5376
					Lus10005955 [exp]	12.5	0.7080
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	23.8	0.6837
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	25.5	0.6844
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	25.6	0.6707
					Lus10004431 [exp]	30.5	0.6679
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	33.4	0.6151
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	36.2	0.6489

Compare expression of checked genes

Lus10022654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.