Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04380 385 / 5e-132 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT1G04050 317 / 4e-102 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G43990 314 / 2e-101 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G73100 119 / 2e-29 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G23740 117 / 1e-28 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT5G04940 116 / 3e-28 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT5G13960 109 / 4e-26 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 107 / 2e-25 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 105 / 2e-24 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT3G03750 100 / 2e-23 SUVR3, SDG20 SET domain protein 20 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012513 [exp] 610 / 0 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10005476 [exp] 374 / 2e-127 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10024946 [exp] 325 / 9e-105 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 296 / 1e-93 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10027956 [exp] 193 / 3e-61 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 150 / 6e-44 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10040150 [exp] 118 / 5e-29 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10022483 [exp] 118 / 9e-29 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10001011 [exp] 115 / 8e-28 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138600 [exp] 479 / 4e-167 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.013G048100 [exp] 392 / 3e-132 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.002G257400 [exp] 366 / 4e-120 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.014G192500 [exp] 365 / 2e-119 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.005G129800 [exp] 130 / 4e-33 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.007G033000 [exp] 129 / 1e-32 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G188700 [exp] 112 / 4e-27 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G083100 [exp] 109 / 7e-26 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 108 / 1e-25 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 107 / 4e-25 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10022657 pacid=23178513 polypeptide=Lus10022657 locus=Lus10022657.g ID=Lus10022657.BGIv1.0 annot-version=v1.0 ATGGCCGAACAAGAACAAGAACAAGAACGAGAAGCAGTGAGCTCCAACAAGTATCAAATCTACAAAAGAGACATATCAAGAGGCCAAGAAAGCGTCAAAC TCCCACTGGTCAACAACAATAATCTGATCATCAAGCCACCAAACATCTTATACATCAGCACCAACATGGTCCACAAGGACGCCCACGTGGACTTCTCCGT ATCTCGAATATCCGACGAGGACTGCTGCTCGAGCTGCCTCGGAGACTGTTTAGCCGCAGAGCTCCCCTGCCGGTGTGCTGCCGAGACCGGAGGGGAGTTT GCTTACACTTCGGAAGGGTTGCTGAAGGGAGAGTTTCTGGATAAGTGTGTGGCGTTGAACAAGTTGCCAGAGACGAAGCATTATTACTACTGTGAGAAGG TTTGTCCTTTGAGTAATGATTTGAGCAAGAAGGGGAAGAAGGTTAAGGCTTGTAAGGGGCACTTGAGTAGGAAGTTCATCAAGGAGTGCTGGATCAAGTG TGGGTGTAATAAGAGGTGTGGGAATCGGGTCATCCAAAAAGGGGTTCAGGTCCCACTTCAGGTGTTTGCAACTTCGGCAGAGAAAGGGTGGGGAGTAAGA TCAGTAACAGCACTAAAGAAGGGAACATTCATCTGCGAGTACATCGGCGAGATCGTGACGAATCAGGAGCTCTACGAGAGGAACAAGGAAAGGGTGGCCA AGAACGAAGTGCACACTTATCCAGTGCTGCTTGATGCTGACTGGGGATCCGAGAGGATCCTCAAGGACGAGGAGGCTCTCTGCTTGGACGCTACCGAGTT TGGGAATGTCGGCAGGTTCATCAATCACAGATGTGAAGATGCTAACCTGATTGAGATGCCGGTGGAGGTGGAGTCACCGGATCATCATTACTACCACGTA GCCTTTTTCACGGTGAGAGATGTGGAAGCAATGGAAGAACTAACATGGGATTATGGGATTGAATTTGACGACATATACCATCCTATCAAAGCATTCAAGT GCAAATGTGGGAGCAAACTTTGTCGAGATAAGAACAGAGCCTCACCACAATCATTTCCAAAGAAACTAAAGGTGAATGGGAAATGA
AA sequence Show only first row Show all	>Lus10022657 pacid=23178513 polypeptide=Lus10022657 locus=Lus10022657.g ID=Lus10022657.BGIv1.0 annot-version=v1.0 MAEQEQEQEREAVSSNKYQIYKRDISRGQESVKLPLVNNNNLIIKPPNILYISTNMVHKDAHVDFSVSRISDEDCCSSCLGDCLAAELPCRCAAETGGEF AYTSEGLLKGEFLDKCVALNKLPETKHYYYCEKVCPLSNDLSKKGKKVKACKGHLSRKFIKECWIKCGCNKRCGNRVIQKGVQVPLQVFATSAEKGWGVR SVTALKKGTFICEYIGEIVTNQELYERNKERVAKNEVHTYPVLLDADWGSERILKDEEALCLDATEFGNVGRFINHRCEDANLIEMPVEVESPDHHYYHV AFFTVRDVEAMEELTWDYGIEFDDIYHPIKAFKCKCGSKLCRDKNRASPQSFPKKLKVNGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10022657 [exp]	0	1
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10035367 [exp]	2.0	0.8076
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004547 [exp]	10.2	0.7463
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	17.6	0.7647
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	18.4	0.7181
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031236 [exp]	18.5	0.7203
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	18.7	0.7115
AT5G66440			unknown protein		Lus10014287 [exp]	20.5	0.7221
AT5G46850			unknown protein		Lus10030954 [exp]	23.0	0.6904
AT4G37810			unknown protein		Lus10028241 [exp]	26.5	0.6740
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	28.5	0.7482

Compare expression of checked genes

Lus10022657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.