Plant FIBer expression Database

Lus10022658 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012513
[exp]
111 / 2e-28 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Lus10015836
[exp]
42 / 4e-05 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10022658 pacid=23178613 polypeptide=Lus10022658 locus=Lus10022658.g ID=Lus10022658.BGIv1.0 annot-version=v1.0
ATGGCCGCAACTCATCTCCAACCCACACCACAATCCATAGCTGCTAATGCCGTCATCATCACCAACGTCTCCATCACCGCTAATGTCCTCATCACCGCCA
ACGTCGCCATAGCCACGAACATCGCCATCGTTGTTGCTATGTCGCTTATCACCTCCATTGATGCATCCCTACCCCTTCCAAAAAACATGATCATGACATC
ATACATGTGTCACCAGCTGATCAGCCAGAGGCGACCGATCCGGTTCTCTGAGCCTTTTCTGAAACTTCCAACTCTCAGCTTCTGCAGCAATGGCGAAATG
AGCATCGCCGTGAAAACTATTATAAAGAAACAGTTAAAAAACGCGAAGAAGAAGAGAGAAAACCTGTTGGAAACATGTCGGCGCAATACGATCGTCCGTG
GTAATCAGAACTCTGTTTCTTCTTCGGGGAAATCAAAATCACAGCCTCGAAACACTGCACCAGGTTCGTTTCTAGGGAATATTCGCCAAATTGCTGATCA
CAATTCTAGCCACGAAAAGCGCAGTCGCAACTTTTACCACGGAGATCAACTCATCGACCTAGTAGACAAGGATGAGGACGAGAACGAGGTACATTCTATT
GGTCATAACAGTACAAAGAAGAGGGAATCTCCAGCGTTGATCTCATCGGAGTCCGAGCCGTGCATCCCGAGCATAATCTGA
AA sequence
>Lus10022658 pacid=23178613 polypeptide=Lus10022658 locus=Lus10022658.g ID=Lus10022658.BGIv1.0 annot-version=v1.0
MAATHLQPTPQSIAANAVIITNVSITANVLITANVAIATNIAIVVAMSLITSIDASLPLPKNMIMTSYMCHQLISQRRPIRFSEPFLKLPTLSFCSNGEM
SIAVKTIIKKQLKNAKKKRENLLETCRRNTIVRGNQNSVSSSGKSKSQPRNTAPGSFLGNIRQIADHNSSHEKRSRNFYHGDQLIDLVDKDEDENEVHSI
GHNSTKKRESPALISSESEPCIPSII

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10022658
[exp]
0 1
AT3G15850 JB67, FADB, ADS... FATTY ACID DESATURASE B, fatty... Lus10034969
[exp]
3.7 0.7314
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10031978
[exp]
5.2 0.7832
AT4G27570 UDP-Glycosyltransferase superf... Lus10027483
[exp]
7.3 0.6202
AT1G67540 unknown protein Lus10006428
[exp]
10.7 0.6423
AT2G30710 Ypt/Rab-GAP domain of gyp1p su... Lus10025585
[exp]
11.0 0.6995
AT1G29670 GDSL-like Lipase/Acylhydrolase... Lus10012001
[exp]
21.5 0.6204
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10006971
[exp]
21.9 0.6162
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10024903
[exp]
23.9 0.6149
AT5G03050 unknown protein Lus10012904
[exp]
26.0 0.6470
AT4G17920 RING/U-box superfamily protein... Lus10035368
[exp]
26.6 0.5950

Lus10022658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.