Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64050 857 / 0 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1) AT5G26710 65 / 8e-11 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT1G25350 49 / 1e-05 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012512 [exp] 1129 / 0 AT5G64050 887 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10026044 [exp] 67 / 2e-11 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10014335 [exp] 64 / 3e-10 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10034339 [exp] 47 / 6e-05 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10041433 [exp] 45 / 0.0001 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169700 [exp] 878 / 0 AT5G64050 922 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Potri.005G001200 [exp] 68 / 1e-11 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.013G000400 [exp] 67 / 2e-11 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.010G122866 [exp] 49 / 4e-06 AT1G25350 558 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.008G122200 [exp] 48 / 2e-05 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00749 [flax] [poplar] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10022659 pacid=23178554 polypeptide=Lus10022659 locus=Lus10022659.g ID=Lus10022659.BGIv1.0 annot-version=v1.0 ATGGCCAGGTCAATGGCAGCAGCTACAGCTTCCGGAACAGCTCCATGGATGATGAGGGCCACGAGGAGCATAGTCACCACTTCTTTCCGCAACCTGCCTC ACTATCCCACTGTCCAATCACATCAATTCCTCATTTTTAAAAAACCCCTCCGATTCACGTCCCTTGCCCCTTCCCCTTCTAGAACCTTCTCCGTCTCCGC CGCTTCCGGATCCACCGGCGGCGAAAAACAGCAGCAAGTCCGAGTTCGTTTCGCTCCTTCCCCAACTGGAAACCTTCACGTCGGTGGTGCTCGAACTGCT CTCTTCAATTATCTCTTTGCAAGGGCAAATGGCGGCAAATTTGTGCTGCGGATTGAAGACACTGACTTGGAGAGGTCAACTAGAGAGTCTGAAGAGGCCG TGCTTAGAGATCTTTCCTGGCTTGCTCTTGATTGGGATGAAGGTCCTGGAATGGGTGGAGATTATGGCCCCTATCGGCAATCTGAAAGGAATGCTCTTTA TAAACAACACGCTGACAAACTCATCGAGTCCGGTCATGTTTACCGCTGCTTCTGTTCCAACGAGGAACTTGAGAAAATGAAGGAGATAGCAAAACTGAAG CAACTGCCTCCTGTGTACACCGGAAAATGGGCAACTGCAACGGATGATGAAGTAATGCAGGAGATGGAAAAGGGTACCCCTTTCACATATCGTTTTCGTG TTCCGAAGCAGGGGAGACTGAAAATTAATGATCTCATTCGGGGTGAAGTTAGTTGGAATCTTGACACGCTTGGAGATTTTGTTATCATGAGGAGCAATGG ACAACCTGTTTACAACTTCTGTGTCACAGTAGATGATGCCACTATGGCCATCTCACATGTTATTAGGGCCGAAGAGCATTTGCCAAATACACTGAGGCAA GCATTAATATATCAGGCTCTTGGATTACCAATGCCTCAGTTTGCACACGTGTCTCTGATTCTAGCACCCGATCGAAGCAAGCTATCAAAAAGGCACGGTG CTACTTCAGTGGGTCAGTTCAGGGAGATGGGCTACCTGCCCCAAGGAATGGTAAATTACCTAGCCCTCTTAGGTTGGGGTGATGGCACTGAAAATGAATT TTTCACCCTTGAACAACTAGTTGAAAAGTTCACAATCGACCGTGTTAACAAAAGTGGTGCGGTGTTTGATTCAACTAAGTTGAGATGGATGAATGGTCAG CATTTAAGAGCACTTCCGTCCGAGAAGTTGACGAAGCTTATAGGTGAACGCTGGAAGGACACTGGCATCCTTATGGAGTCAGAGGGACCTTTTGTAGAGG AGGCTCTTGAGCTGCTGAAGGATGGGATAGATTTGGTAACTGATGCAGACAAAGTAATGCTGAATCTCTTGTCATATCCTTTACAAGAGACGTTAACGAG CCCTGAAGGGAAAGCAGTAATAGAAGATAAACTGTCTGAACTTTCATCAAGCCTGTTGTCAGCATACGACAGCGGGGAACTTGGTACTGCACTGGAAGGA GGTCATTCAGGGTGGAAGAAGTGGGTGAAGGACTTTGGAAAATCCACGAAACGCAAGGGGAAATCTTTGTTCATGCCACTACGAGTGCTGCTAACAGGGA AGCTGCATGGTCCTGATATGGGTGGGAGTATGGTGTTGCTCCATAGAGCTGGAGTTGAAGGTATAGTTGGTCGTGTAGTAGGGTTCTTGAGATTGGAAGA GAGATTTAGACTGTTGAGGGAAGTGAACTGGGATGCAATTTCATCAAGCAAATGTGAAGGTGCTGTAGAGTCAGCCGCAGGTGTTTCCAACTGA
AA sequence Show only first row Show all	>Lus10022659 pacid=23178554 polypeptide=Lus10022659 locus=Lus10022659.g ID=Lus10022659.BGIv1.0 annot-version=v1.0 MARSMAAATASGTAPWMMRATRSIVTTSFRNLPHYPTVQSHQFLIFKKPLRFTSLAPSPSRTFSVSAASGSTGGEKQQQVRVRFAPSPTGNLHVGGARTA LFNYLFARANGGKFVLRIEDTDLERSTRESEEAVLRDLSWLALDWDEGPGMGGDYGPYRQSERNALYKQHADKLIESGHVYRCFCSNEELEKMKEIAKLK QLPPVYTGKWATATDDEVMQEMEKGTPFTYRFRVPKQGRLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQ ALIYQALGLPMPQFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQGMVNYLALLGWGDGTENEFFTLEQLVEKFTIDRVNKSGAVFDSTKLRWMNGQ HLRALPSEKLTKLIGERWKDTGILMESEGPFVEEALELLKDGIDLVTDADKVMLNLLSYPLQETLTSPEGKAVIEDKLSELSSSLLSAYDSGELGTALEG GHSGWKKWVKDFGKSTKRKGKSLFMPLRVLLTGKLHGPDMGGSMVLLHRAGVEGIVGRVVGFLRLEERFRLLREVNWDAISSSKCEGAVESAAGVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	0	1
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	4.0	0.9475
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	5.3	0.9420
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	5.3	0.9548
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	5.9	0.9427
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10019417 [exp]	6.9	0.9096
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	6.9	0.9438
AT1G48460			unknown protein		Lus10032738 [exp]	11.0	0.9362
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	12.0	0.9348
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	12.2	0.9430
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	15.1	0.9276

Compare expression of checked genes

Lus10022659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.