Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1184 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 862 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 749 / 0 EOL1 ETO1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002206 [exp] 1036 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 1027 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 935 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 932 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 770 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012510 [exp] 239 / 2e-68 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012472 [exp] 201 / 3e-59 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012511 [exp] 154 / 8e-44 AT3G51770 67 / 4e-14 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 142 / 3e-39 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123800 [exp] 1195 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 1155 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 1038 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 1037 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.002G048300 [exp] 794 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 773 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022660 pacid=23178522 polypeptide=Lus10022660 locus=Lus10022660.g ID=Lus10022660.BGIv1.0 annot-version=v1.0 ATGCAGCCTATATTGCGGAGCTTGAAGTTCATCGAGACATGTAAAAGCTCCCATCTTTACGCCCTTAAATCCAGCACCGGCAGCTCATCCGGCCCGGGCC ATAGCCGGGGCGGTAGCGTCAGCGAGAGGATCCTAAGCCATATCCAGGAGTTTCGATGTAGTACTTCTAAACCCTCTCGGAATACACCGCCACCGCCATC GGTGGAAAACCTGATGCCTTGCGGTCTTCCGGAGACGGATATAATGGAGCCGCGGATCGAGCCAAACCTCAAACCCTTGGATCTGATCGAAACCCTGGCT GATTTGTACCGAAGGATCGATAACTGTCCGGAGGAGGGTAGATCGACGGTCTACTTGGAGCAATGCGCTGTATTCGGAGGCTTCTCGGATCTGAAGATGT CGCGACGGAGCCTGCGTGCAGCGAGGCAGCACGCCGTCGATGTCCATTCGAAAATCGTCCTCGGCTCCTGGTTGAGATTCGAGAGGAGGGAGGACGATTT AGTTGGTAAATCGGCGATGGATTGCTTCGGAAGGAACATGGAATGCCCTAGGGCTTGTCTTGAATCAGGTTACGATCCGGATTCAGCGAACAATCCTTGT ACCTGTAGAGGATCTGGTATGTCAATGGCGTGGGATGAGGCAGATTGGGATGATGAAGATGAATGTTCAACTTCTGACGAAGATTCCGACATCGCATTTT GCATCGGCGAAGAAGAAATCAGATGCGTTCGGTACAAATTCGCATCGCTTTCTCAACCGTTCCGAGCAATGCTGTACGGAAACTTCATCGAATCTAGAAG GGAGAAGATATACTTCTCCCTGAACGGAATATCACCTGAAGCGATGAAAGCAGCGGAGGTGTATAGCCGAACAAAGAAGCTCGTGAATGATGTACCGATC GTTCTCGAGCTCCTCTCCTTCGCAAACAGATTCTGCTGCGAGGAAATGAAATCAGCCTGCGATGCTTATCTCGCATTGCAAATCACCGACATCGATCTAG CATTGTTGCTAATCGAGTACGGATTGGAAGAAACAGCTTATCTTCTTTCTGCAGCTTGTTTACAGGTTTTCTTAAGAAACCTCCCGAGCTCAATCCACCA TAGCTGCGTGATGAAATTGTTCTGCACTTCAGAAGGTAAAGAGAAATTAACCGCGGTTGGGCATGCTTCCTTTATTCTGTATTACCTTTTGAGTCAGATT GCAATGGAGGATGACATCAACGCCAACTCCACGGTTATGCTCCTGGAGAGGCTATGCGAGTCTGCAGATGAAATGTGGCAGAAGCAGCTTGCGTATCATC AAATCGGCGTGGTGATGCTGGAGAGGAAAGAGTATAAAGATGCTCACCGGTGGTTTGAAGCGGCGGCCGGAGAAGGGCATGTTTATTCTTTACTGGGGGT TGCGAGGACGAAGTATAAGCGTGGGCATAAGTATGCTGCGTATAAAGTGATGAACTCGTTGATTGCGGATCGTAAACCGTTGGAAGCTGCTTGGATGTAT CAGGAGAGGGCTATTTACTGTAGCGGGAAGGAGAAGCTGCTGGATTTGGATATGGCGACTGCATTGGATCCCAGTCTTACTTTCCCATACAGGTACAGGG CTGTTTCAATGGTGGAAGGTGGCAAACTCGAAGCTGCTGTCTCGGAACTGAACAAAGTTATAGGGTTTAACGTCTCCTCCGACTTGCTCGAGTTACGGGC TTGGATTTCGATCGGTTTGCGGGATTACGAAGGTGCCCTTAGGGATATTCGAGCGCTCTTGACTTTAGAACCGAATTACATGTTGTACAATGGGAAGGTG CATGGTGACCAGTTGGTGGAACTTGTTAGCCCTCTTGTTCAGGAATGGGATGAGGCTTATTGTTGGCATCAACTCTATGATCGATGGTCTTGCGTTGATG ACATAGGGTCCCTAGCTGTAATCCATCAGATGTTGACGTTGGACTCGGAGAAAAGCTCGTTTTGGTTCCGGCAGTCGATTTTGCTCTTACGGTTGAATGC ACAGAAGGCTGCCATGCGCTGTTTGAGACTGGCTAGGAATCTGTCTCCTACCAAGCATGAAATGCTTGTCTATGAAGGTTGGATCTTATACGACACGGGG CATCGCGAAGAAGCGCTAGCTAAGGCCGAGGAGTCTCTTTCAATCCAGAGATCATTCGAAGCGTTTTTCCTGAAAGCGTATATATTAGTGGATCGGGGAG TTGATCCCGAGTCATCAGAGGATGTTATTCAGCTTCTAAATGAAACCCAGAATTGCCCATCGGATCGTTTCCGGAAAGGACAGGCAATGAATACTCTAGG TGATGTTTATGTCGATTGTAAAGAGCTGGATCTTGCTGCCTACTGCTACAACCAAGCACTCGACCTCAGGCACACAAGAGCTCATCAGGGTCTGGCTCGT GTTTACAAGAAAACAATGGATCGGAAAGCTGCATACGATGAGATGACAAAGTTGATAGAGATGGCTAGTAACAATGCCTCGGCTTACGAGAAACGAGCTG AGTATTGTGACATTGACATGGCGAAGAGGGACCTCGCCATGACAACAAAGCTAAATCCTTTGCGCCCTTATCCGTACCGATACAGGGCAGCGGTTCTAAT GGATGACCGCAAAGAAGCCGAAGCGATAGCAGAGCTAACGAAGGCTATAACGTTCAAGCCAGACGCGGGGCTGCTGTGCAATCGAGCGGCATTTTACGAA TCAACGGGGAACATCACCTCGACGCTTCGAGACTGCCAAGCAGCGCTATGTTTCGATCCTTGTCACGGGGATACGATGGAAGTTTACATCAGAGCAAAGC AACGACGAAAACAACAGCATCTGAGCGATGAGCAATCAGATGGTGGGGACTAA
AA sequence Show only first row Show all	>Lus10022660 pacid=23178522 polypeptide=Lus10022660 locus=Lus10022660.g ID=Lus10022660.BGIv1.0 annot-version=v1.0 MQPILRSLKFIETCKSSHLYALKSSTGSSSGPGHSRGGSVSERILSHIQEFRCSTSKPSRNTPPPPSVENLMPCGLPETDIMEPRIEPNLKPLDLIETLA DLYRRIDNCPEEGRSTVYLEQCAVFGGFSDLKMSRRSLRAARQHAVDVHSKIVLGSWLRFERREDDLVGKSAMDCFGRNMECPRACLESGYDPDSANNPC TCRGSGMSMAWDEADWDDEDECSTSDEDSDIAFCIGEEEIRCVRYKFASLSQPFRAMLYGNFIESRREKIYFSLNGISPEAMKAAEVYSRTKKLVNDVPI VLELLSFANRFCCEEMKSACDAYLALQITDIDLALLLIEYGLEETAYLLSAACLQVFLRNLPSSIHHSCVMKLFCTSEGKEKLTAVGHASFILYYLLSQI AMEDDINANSTVMLLERLCESADEMWQKQLAYHQIGVVMLERKEYKDAHRWFEAAAGEGHVYSLLGVARTKYKRGHKYAAYKVMNSLIADRKPLEAAWMY QERAIYCSGKEKLLDLDMATALDPSLTFPYRYRAVSMVEGGKLEAAVSELNKVIGFNVSSDLLELRAWISIGLRDYEGALRDIRALLTLEPNYMLYNGKV HGDQLVELVSPLVQEWDEAYCWHQLYDRWSCVDDIGSLAVIHQMLTLDSEKSSFWFRQSILLLRLNAQKAAMRCLRLARNLSPTKHEMLVYEGWILYDTG HREEALAKAEESLSIQRSFEAFFLKAYILVDRGVDPESSEDVIQLLNETQNCPSDRFRKGQAMNTLGDVYVDCKELDLAAYCYNQALDLRHTRAHQGLAR VYKKTMDRKAAYDEMTKLIEMASNNASAYEKRAEYCDIDMAKRDLAMTTKLNPLRPYPYRYRAAVLMDDRKEAEAIAELTKAITFKPDAGLLCNRAAFYE STGNITSTLRDCQAALCFDPCHGDTMEVYIRAKQRRKQQHLSDEQSDGGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10022660 [exp]	0	1
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037090 [exp]	3.0	0.6830
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	5.0	0.7089
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039513 [exp]	5.3	0.6869
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034816 [exp]	13.1	0.6060
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	16.7	0.6195
					Lus10039943 [exp]	17.7	0.6137
AT5G62440			Protein of unknown function (D...		Lus10022837 [exp]	20.8	0.6112
					Lus10027680 [exp]	21.9	0.6097
AT2G12646			PLATZ transcription factor fam...		Lus10038103 [exp]	24.4	0.6370
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10021239 [exp]	25.0	0.5877

Compare expression of checked genes

Lus10022660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.