Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51760 74 / 3e-15 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012510 [exp] 447 / 2e-155 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10007276 [exp] 45 / 5e-05 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10029830 [exp] 44 / 9e-05 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10020709 [exp] 44 / 0.0001 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123700 [exp] 110 / 5e-28 AT3G51760 87 / 7e-20 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4) Potri.014G142800 [exp] 43 / 0.0003 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10022661 pacid=23178628 polypeptide=Lus10022661 locus=Lus10022661.g ID=Lus10022661.BGIv1.0 annot-version=v1.0 ATGGAGTTTTCTTCTTCTTCTTCTTCACTGCGCATGGAAGAAACATCAGAGGAAGCAAAGGGAAGAAGAAAGCTGGACTTCAACTTGCCACTCTTGTCAA CTAGGCGCCGGTGCAACGACGACGTCGTTTTGGCAGAGCGGTCTTGGACTACTACGGCCACTAACTCCATCAACCTTCCGCAAAGATCGCGAGACCAGTA CCACCGTGTGCCGTTCTGTTGGGAACGAGCTCCGGGGAAGCCTAAGCGGCCGCCGGAGGATATCGGAGCTGATGAGGGCACTCCCCGGCTTAGACTCCCG CCTTGCCGGTGGAATCCGAAAGCCGACGAGGAGAAGGACGTCGTTTTGGAGCATGACGCCAACGATGCATGTAAACCTTGCCCGGTCTTATCAGGCCACG AGGCACAAGATGGCTGTGAGGCTGACGTGAATGATGACCTGGACGTTTATTACTCCAATGCGTACATGGACGCCCTATCCCTAACGGAAGCAATCGACAT CGCCCAGAGAGGCGATAACAAAGGCATTGGCGGCAGCGGAGGAACCTCGTTCGGCCGCAAATTGGACGGAGAGAGAAACACCTATAACGACGGCGGCGAG TATCCGAATTTCATGATGGAGAGGTTCCTGCCAGACGCGACGGCGTTGGCGGCGGCGTCTTCCGTGTTTTGCGCCACCCACAAGATGATGCCACCGTTGG GATCATCGCCGCGGCCTACGAATGGCTATCACTCGCCGGAGAGGTCGACGACGGCGTCGGTAATTGCGCAGAAAGGGTGTGGGTTTGATGCTCTGTTCGC GTGGCGGGGGACGAATAAGCACAAGCTGTGTAATGCGAAGAACGCCGAACGACAAGTCGTTTTGGCCAGCGTCGATGGACAGCTGCCAGCTCAACGGCGG AGTGATGCTAAGGATACCAAATGGCGTCGTAACTTCGATAAGGAGTGTTTGGGAAGTAGAAAGTGA
AA sequence Show only first row Show all	>Lus10022661 pacid=23178628 polypeptide=Lus10022661 locus=Lus10022661.g ID=Lus10022661.BGIv1.0 annot-version=v1.0 MEFSSSSSSLRMEETSEEAKGRRKLDFNLPLLSTRRRCNDDVVLAERSWTTTATNSINLPQRSRDQYHRVPFCWERAPGKPKRPPEDIGADEGTPRLRLP PCRWNPKADEEKDVVLEHDANDACKPCPVLSGHEAQDGCEADVNDDLDVYYSNAYMDALSLTEAIDIAQRGDNKGIGGSGGTSFGRKLDGERNTYNDGGE YPNFMMERFLPDATALAAASSVFCATHKMMPPLGSSPRPTNGYHSPERSTTASVIAQKGCGFDALFAWRGTNKHKLCNAKNAERQVVLASVDGQLPAQRR SDAKDTKWRRNFDKECLGSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	0	1
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012510 [exp]	1.0	0.8522
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	3.7	0.8485
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	4.9	0.8315
					Lus10017461 [exp]	5.0	0.7905
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	8.4	0.7825
					Lus10038720 [exp]	8.7	0.8241
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10023208 [exp]	12.8	0.7601
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	14.5	0.7603
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10024492 [exp]	14.7	0.6959
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	15.9	0.7274

Compare expression of checked genes

Lus10022661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.