Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01550 625 / 0 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT3G08870 603 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01560 594 / 0 LECRKA4.3 lectin receptor kinase a4.3 (.1) AT5G01540 571 / 0 LECRKA4.1 lectin receptor kinase a4.1 (.1) AT3G55550 545 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 527 / 1e-179 RLK receptor lectin kinase (.1) AT4G29050 523 / 3e-178 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 522 / 1e-177 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 511 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 499 / 9e-169 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012509 [exp] 1060 / 0 AT3G08870 555 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 563 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 559 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 555 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 554 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 549 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 545 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 545 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 542 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103200 [exp] 748 / 0 AT3G08870 644 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G123300 [exp] 718 / 0 AT5G01550 629 / 0.0 lectin receptor kinase a4.1 (.1) Potri.016G122650 [exp] 690 / 0 AT5G01550 576 / 0.0 lectin receptor kinase a4.1 (.1) Potri.006G088900 [exp] 575 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 574 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 573 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 566 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.009G036300 [exp] 563 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 562 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 557 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10022662 pacid=23178633 polypeptide=Lus10022662 locus=Lus10022662.g ID=Lus10022662.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGCCTAATAAGAAACTCTTTTTGCTCTGTCTTGTCATCTTCATCATCATCTCGTCCACAACAACAGCTCGACCTTCCGATGGTGTTCAAT TCACCTACAACGGATTCAACGGCTCCGACGGTGATATCCTCCTCAACAGCGACAGGACTTCAATCTTGAAACCCAGCGGCGCCTTACGACTAACCTCCAC GGCAAACAAACACGCCATAGGCCACGCTTTCCACAAACAACCAATTCGATTCCCAAACGCCACGGCTACTTCCTTCAGCACTACTTTCGTCTTCGCCATC ACACCTCCGGCGTCCGGCAAAGGCGGATTCGGCCTTGCCTTCGTTCTCTCCGCCGCTACGGAATTCCCCGGCGCCGCCGCTGACCACTACCTCGGCCTCT TCAACTCCACCACCGACAGCGACCCGTCGAACCACATCTTCGCCGTCGAGTTCGACACCGTCAACGGGGTCAACGACGCTGTGGATACCGACGGGAACCA CGTCGGGATAAACGTCAACAGTATGGACTCCAACGAGACCAGACCTGCTTCCTATATCGACGAGAATGGCCGAGAACAGGAAGTGGTTCTACAGAGTGGG GATCCGATTCAAGCCTGGGTAGAATACGACGCCGTTTCGAAATCGGTCAACGTAACCCTCTCCCCCGCAGAGAAACAGAAACCAACCACCCCTCTCCTCA ATTTCCCCATAGATCTTACGACGATCGTAAAGGAGACTATGTACATCGGCTTCTCTGCTTCAACAGGGGCCAAAGCCAGCTCGCATTACATCCTCGGATG GAGCTTCGGAAATCCAGCTCAGCCGCTCAATTCATCCCAGCTCCCTCCCACGCCGGCGTCGGAGGGCAGTGAGAATTCGAAATTGAAGCCGTCGGTAATC GCTCTAATCGCCGCTCTATGCGCAGTGACAGTCGCTCTGATCGGATTCATGGCGTTCGTCATTCTGCACAAGAGAGTGATGATGCGATTGGAGGTTTTGG AAGATTGGGAATTGGAATGCCCTCACAGATTCAGCTACCGAGATCTGTACTCGGCCACGGGAGGATTCAGCGACAGCGAGATTATCGGTATCGGCGGGTT CGGATCCGTCTACAGAGCGACATTCCCCAATTCCGACATCCTCCTCGCCGTAAAGAAGATAACGCGGAACTCGATCCAAGGGATTCGCGAGTTCGCGGCG GAGATCGAGAGCCTGGGGAGGCTACGGCACAAGAATCTGGTGAATCTACAAGGATGGTGCAAGCACAAGAACGATCTGTTGCTAATTTACGATTATATCC CCAACGGCAGCCTGGATTTCTTCTTATACAGGAGGCCGAACGCGGTCGTTTTGACATGGGAGCAGAGGTTCAAAATCGTTAAAGGAATCGCGGCCGGATT GTTGTATCTCCACGAGGAATGGGAGCAGGTGGTGATCCACCGGGACGTGAAATCGAGCAATGTGTTGATTGACGGGGAGATGAACGGACGGTTGGGGGAT TTTGGATTGGCCAGGCTGTACGATCACGGTACGGCGTCGTATACGACGAATGTGGTCGGGACGGTCGGGTACATCGCACCCGAGATGGCCCGAACCGGGA AGGCATCGACCCGGTCGGATGTGTTTGCATTCGGGGTGCTTTTGTTGGAGATTGTCACGGGGAGAAGGCCGATCGACGGAGAATGTTTCATATTGGTGGA TTGGGTGATGGAGAGGTTGGGGATCGGGGATGTTCTCGAGGTGGCGGATTCGAAATTGGGTGGTGGGTACGCGGCGGAGGAGGTGAAAATGGTCTTGGGA TTGGGGTTGGTTTGTGCTCATCCGAGGCAGGAGTGTAGGCCGACGATGAGGCAGGTGGTGAGGTACCTGGACGGCGAGGAGGAGATTCCAGCGGTGGATG AGGATGGATACGACGACGTTTTGGGGAGTGCAAGGAGGATGAATTTTAGTCTGTTAGGTGTAATTAATGGTAATCATAATAGAAAGGAGATCATTAATGG TGGAGCGTCTGATTTTTACAGCTCTTCTTCTATTGGTGGTGCTTCCGTAAATTCTATCTATGATGGTAGATAG
AA sequence Show only first row Show all	>Lus10022662 pacid=23178633 polypeptide=Lus10022662 locus=Lus10022662.g ID=Lus10022662.BGIv1.0 annot-version=v1.0 MAAEPNKKLFLLCLVIFIIISSTTTARPSDGVQFTYNGFNGSDGDILLNSDRTSILKPSGALRLTSTANKHAIGHAFHKQPIRFPNATATSFSTTFVFAI TPPASGKGGFGLAFVLSAATEFPGAAADHYLGLFNSTTDSDPSNHIFAVEFDTVNGVNDAVDTDGNHVGINVNSMDSNETRPASYIDENGREQEVVLQSG DPIQAWVEYDAVSKSVNVTLSPAEKQKPTTPLLNFPIDLTTIVKETMYIGFSASTGAKASSHYILGWSFGNPAQPLNSSQLPPTPASEGSENSKLKPSVI ALIAALCAVTVALIGFMAFVILHKRVMMRLEVLEDWELECPHRFSYRDLYSATGGFSDSEIIGIGGFGSVYRATFPNSDILLAVKKITRNSIQGIREFAA EIESLGRLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDFFLYRRPNAVVLTWEQRFKIVKGIAAGLLYLHEEWEQVVIHRDVKSSNVLIDGEMNGRLGD FGLARLYDHGTASYTTNVVGTVGYIAPEMARTGKASTRSDVFAFGVLLLEIVTGRRPIDGECFILVDWVMERLGIGDVLEVADSKLGGGYAAEEVKMVLG LGLVCAHPRQECRPTMRQVVRYLDGEEEIPAVDEDGYDDVLGSARRMNFSLLGVINGNHNRKEIINGGASDFYSSSSIGGASVNSIYDGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Lus10022662 [exp]	0	1
					Lus10026102 [exp]	1.7	0.9080
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	3.7	0.8813
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10015059 [exp]	6.7	0.8725
AT1G21065			unknown protein		Lus10016049 [exp]	7.9	0.8858
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	9.1	0.8959
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	9.2	0.8838
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	9.2	0.8778
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	11.0	0.8840
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	12.0	0.8834
AT3G08870			Concanavalin A-like lectin pro...		Lus10012509 [exp]	12.8	0.8416

Compare expression of checked genes

Lus10022662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.