Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 380 / 1e-121 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 361 / 2e-114 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 357 / 4e-113 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G15210 340 / 5e-107 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 338 / 2e-106 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 331 / 9e-104 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT3G30842 330 / 2e-103 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT3G53480 320 / 2e-99 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 317 / 1e-98 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1) AT4G15233 306 / 9e-95 ABCG42 ATP-binding cassette G42, ABC-2 and Plant PDR ABC-type transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041685 [exp] 443 / 8e-150 AT1G15520 1271 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 452 / 8e-149 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 441 / 8e-145 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 441 / 2e-144 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 437 / 7e-143 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 387 / 3e-124 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 367 / 1e-116 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10027727 [exp] 343 / 3e-113 AT1G66950 974 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10024062 [exp] 348 / 1e-109 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179000 [exp] 410 / 7e-133 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G057250 [exp] 378 / 1e-131 AT1G15520 485 / 1e-160 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 404 / 3e-130 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 403 / 3e-130 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 403 / 3e-130 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 401 / 2e-129 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 401 / 3e-129 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 399 / 2e-128 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 370 / 7e-118 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 354 / 4e-112 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10022663 pacid=23178616 polypeptide=Lus10022663 locus=Lus10022663.g ID=Lus10022663.BGIv1.0 annot-version=v1.0 ATGGAGGGATGGTTTTTGTTTTTGGTGGCGGAGGAGGAGATAGCTATGGAAGATGAACAGAGTCCGATGGAGGGAAGTGAGACTCTCTTCAATGCTCTCC ATCTCCTTCCTAGCAAGAAGAGACATCTCACAATCCTCAATGATATTAGTGGAATCATCAAGCTGTCGAGAATGACTTTGCTTTTTGGTCCACCAAGCTC GGGGAAAACAACTCTGCTGCTAGCTCTTGCAGGAAGATTGGATGATCCAAATCTCAAGGTTTCAGGAAAGTTTACTTACAATGGCCATGAGACGAATGAA TTTATCCCTCAGAAAACTTCAGCCTACATCAGCCAGCATGATCTTCATCTGAGAGAGTTGACTGTCAGAGAAACTCTGTCATTTGCAGCTAGAGACGAGG GAGTTGGATCTTTCCATGATATGTTGGCTGAGTTGTCTAGAAGAGAAAAGGCTGCAAGCATCAAGCCTGATCCTGACATTGCTGTTTTCATGCAGGTAAG CTGTTGCAACAGAAAGAGCAATGTGGTGACTGACTATGTCTTGAAGATATTGGGGCTTGAAGTTTGCGCAAACACTCTCATGGGTGACCAAATGTTCAGA GGTATCTCCGGAGGACAAAGAAAGCGTGTCACAACAGGTGAAATGCTGGTTGGAACGGTAGCAAGAGCATTGTTCATGGACGAAATATCAACCGGGTTGG ATAGTTCCACGACTTTCCAAATCGTGAACTCACTCAAGCAGTATAATCATATCATGACTAGAACTTCTGTCATTTCGCTCCTCCATCCCGCTCCGGAGAC GTACGACCTCTTCAATCACATCATCCTCTTATCAGACGGGCAGGTCGTGTACCATGGTCCTCACAACAATGTGCTCAAATTCTTTGAGGATATGGGTTCA GGTGTTGATAAATGGATTTTACTCGTTCTCAAAATAAATCGGTTAATGAATTAA
AA sequence Show only first row Show all	>Lus10022663 pacid=23178616 polypeptide=Lus10022663 locus=Lus10022663.g ID=Lus10022663.BGIv1.0 annot-version=v1.0 MEGWFLFLVAEEEIAMEDEQSPMEGSETLFNALHLLPSKKRHLTILNDISGIIKLSRMTLLFGPPSSGKTTLLLALAGRLDDPNLKVSGKFTYNGHETNE FIPQKTSAYISQHDLHLRELTVRETLSFAARDEGVGSFHDMLAELSRREKAASIKPDPDIAVFMQVSCCNRKSNVVTDYVLKILGLEVCANTLMGDQMFR GISGGQRKRVTTGEMLVGTVARALFMDEISTGLDSSTTFQIVNSLKQYNHIMTRTSVISLLHPAPETYDLFNHIILLSDGQVVYHGPHNNVLKFFEDMGS GVDKWILLVLKINRLMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	0	1
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	1.4	0.9055
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	2.0	0.9034
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10041286 [exp]	3.5	0.8180
					Lus10034884 [exp]	4.0	0.8393
					Lus10007992 [exp]	4.2	0.8613
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	4.6	0.8129
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	5.7	0.8050
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	5.9	0.8198
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	7.4	0.7843
AT5G10010			unknown protein		Lus10006744 [exp]	11.0	0.7609

Compare expression of checked genes

Lus10022663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.