Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30110 744 / 0 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 740 / 0 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT5G05490 71 / 1e-12 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT2G21470 63 / 4e-10 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012507 [exp] 907 / 0 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 692 / 0 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 689 / 0 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022711 [exp] 423 / 4e-140 AT5G05490 103 / 3e-23 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) Lus10014204 [exp] 409 / 4e-133 AT5G05490 314 / 3e-98 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) Lus10017479 [exp] 54 / 6e-07 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 54 / 6e-07 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280600 [exp] 772 / 0 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 772 / 0 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 771 / 0 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.008G072300 [exp] 147 / 5e-37 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) Potri.004G158900 [exp] 54 / 3e-07 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.009G120200 [exp] 53 / 6e-07 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09358 [flax] [poplar] E1_UFD Ubiquitin fold domain PF10585 [flax] [poplar] UBA_e1_thiolCys Ubiquitin-activating enzyme active site
Representative CDS sequence Show only first row Show all	>Lus10022665 pacid=23178577 polypeptide=Lus10022665 locus=Lus10022665.g ID=Lus10022665.BGIv1.0 annot-version=v1.0 ATGGTCATTCCACATCTAACTGAAAATTACGGGGCCTCGCGTGACCCACCTGAAAAGCAAGCCCCCATGTGTACAGTTCACTCATTCCCTCACAACATCG ACCACTGTCTAACATGGGCGCGTTCTGAATTCGAGGGTTTGCTTGAGAAGACTCCTGCGGAGGTAAATGCCTACTTGTCTGGTCCGGTGGAGTATGCCAC TGCAATGAAGAATGCTGGTGATGCCCAGGCAAAAGACAACTTGGAACGTGTTCTTGAGTGCCTTGAGAAGGATAGATGTTTGGAGTTCCAGGACTGCATC ACTTGGGCTCGTCTGAAATTTGAAGATTACTTTGTCAACCGTGTAAAACAGCTGACATTCACTTTCCCTGAGGATGCCTTGACTAGTAGTGGAACCCCAT TCTGGTCTGCACCAAAGAGATTTCCCCGCCCTCTTCAGTTCTCAACTGACGACATCAGTCACCTTCACTTTGTCTTGGCTGGAGCCATCTTACGTGCCGA AATCTTCGGAATTCCAGTACCTGACTGGGTTAAGTCTTCCACAAAGCTTGCCGATGCTATTAATAGTGTGATCGTTCCAGATTTCGAGCCTAAGACGGGT GTAAAGATTGAAACAGATGAGAAGGCAACCAGTGTTCCTGCAGCGTCGATTGATGATGCCAAAGTTATTGATGAGCTTGTTAAGAAGCTGGAAGCTTGCA GGCAGCAGCTAGTGCCTGGATTCAAAATGGCTCCTATCCAATTCGAAAAGGACGATGACACGAATTATCACATGGACCTGATAGCTGGACTGGCAAACAT GAGGGCAAGGAACTACGGCATTCCAGAAGTAGACAAACTCAAGGCCAAATTCATCGCCGGCAGAATCATCCCAGCAATCGCCACATCCACGGCCATGGCA ACAGGCCTCGTCTGCTTGGAGCTGTACAAGGTTCTCGACGGAGGACACAAGCTCGAGGACTACAGAAACAGCTTCGCCAACCTAGCACTCCCTCTCTTCT CCATCGCAGAGCCTGTCCCTCCCAAGGTGATCAAGCATCAAGACATGAGCTGGACCGTGTGGGACCGTTGGATCGTCACGGACAACCCGACTGTGCGGGA GCTTCTCAAGTGGCTCTCGGACAAAGGCCTGGACGCCTACAGCATCTCCTACGGCAGCTGTCTCCTGTACAACACCATGTTTCCGAAGCACAAGGAGCGA ATGGATCGGAAGATGGTTGATCTTGCTAGGGAAGTAGCCAAGGCTGAGTTGCCTCCGAACCGACGCCACTTCGATGTCGTGGTTGCCTGCGAGGACGAGG AGGAAAAGGAAGTTGATATCCCGCAGCAACTTGAAGATGTAGACGAGGCTTATTATACCTATGACGCTATGGAAGAAGATGGGGCTGGGAATATGCATCA TCAAGCTGATCCTGAAAACATTACACTTACCGATCGCTTTGATCCACGTCAAGTTGACACTGAAATGTATGATCGCTTTGAAAGATTTGACATTGATGGA GACGGGGATACAAATGTGAACATGACTTTTGAAGACGAAACAGATTTCCCTACGACTCATATACCGGCCCGGCCGCCACCTCCACCCCGGCTCATGATGC TGAAGAAGGTCTACTTGAAGATGCTTATACTTATTTGCACTACAGAGATTCCAGACCAGCATTTCGGAAACCATGTAAATCAGAAGCCCCAAGAATCAAA TGGAGAAGGACAGGTTCAAGGAGTAATCAGAAGGAAAAGAAAGAGAAGAGCAGGAGCTGGAATAATAGATTATGAGACAATAGTCGTTCCTAGTGATCTG TACCAGTCATGGCTTCAAGATGCTTCTGACATCTCCTCAAGGAGAGGCAGAAAGAAGAAGGGTCCAAAGAGTATCATGTCACAAATGAAGGTCTCCACTC TCATGGACATACCACCTATGGTACTTATTGACAAAACCTCGATCAACGCTAACAAAGAAAACTTTGAAGACTTTCAGAATAATGTTGGCTCTCAGTCGGT TGGTACTTCAGTCGAGAGGCCAGTAGCACCAGTTGGCAGCGTGGAAAACCTGATGGGCAAACTGGAAGCCAACCTTCCTTTCCGTGATGAGTTTGAAGTC AGCTTTGACAACAACAAGATAAAAGGAAAAGAACCAATTTTCACCACTCCTGTCGATGCCGGTAATGGAGCCAGATTCGCACATAGTTCAAGTTCTGGAC CGCCACATTACTCTGACAGGAACTCTGGACAGTAA
AA sequence Show only first row Show all	>Lus10022665 pacid=23178577 polypeptide=Lus10022665 locus=Lus10022665.g ID=Lus10022665.BGIv1.0 annot-version=v1.0 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSGPVEYATAMKNAGDAQAKDNLERVLECLEKDRCLEFQDCI TWARLKFEDYFVNRVKQLTFTFPEDALTSSGTPFWSAPKRFPRPLQFSTDDISHLHFVLAGAILRAEIFGIPVPDWVKSSTKLADAINSVIVPDFEPKTG VKIETDEKATSVPAASIDDAKVIDELVKKLEACRQQLVPGFKMAPIQFEKDDDTNYHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMA TGLVCLELYKVLDGGHKLEDYRNSFANLALPLFSIAEPVPPKVIKHQDMSWTVWDRWIVTDNPTVRELLKWLSDKGLDAYSISYGSCLLYNTMFPKHKER MDRKMVDLAREVAKAELPPNRRHFDVVVACEDEEEKEVDIPQQLEDVDEAYYTYDAMEEDGAGNMHHQADPENITLTDRFDPRQVDTEMYDRFERFDIDG DGDTNVNMTFEDETDFPTTHIPARPPPPPRLMMLKKVYLKMLILICTTEIPDQHFGNHVNQKPQESNGEGQVQGVIRRKRKRRAGAGIIDYETIVVPSDL YQSWLQDASDISSRRGRKKKGPKSIMSQMKVSTLMDIPPMVLIDKTSINANKENFEDFQNNVGSQSVGTSVERPVAPVGSVENLMGKLEANLPFRDEFEV SFDNNKIKGKEPIFTTPVDAGNGARFAHSSSSGPPHYSDRNSGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022665 [exp]	0	1
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	3.0	0.8963
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	3.5	0.8951
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	4.6	0.8847
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	7.3	0.8569
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	7.7	0.8650
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	7.7	0.8819
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	8.4	0.8660
AT5G13970			unknown protein		Lus10035116 [exp]	8.9	0.8327
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	10.2	0.8619
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	12.0	0.8572

Compare expression of checked genes

Lus10022665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.