Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30110 765 / 0 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 744 / 0 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT5G50680 83 / 4e-17 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT5G50580 83 / 4e-17 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT4G24940 77 / 4e-15 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT1G05180 57 / 2e-08 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 57 / 3e-08 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT5G19180 45 / 8e-05 ECR1 E1 C-terminal related 1 (.1) AT2G21470 44 / 0.0004 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012507 [exp] 921 / 0 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 761 / 0 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 746 / 0 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10008977 [exp] 83 / 7e-17 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1) Lus10028846 [exp] 82 / 8e-17 AT4G24940 475 / 7e-170 SUMO-activating enzyme 1A (.1) Lus10015115 [exp] 65 / 6e-11 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031562 [exp] 58 / 1e-08 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10034043 [exp] 49 / 1e-05 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 48 / 1e-05 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280600 [exp] 786 / 0 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 783 / 0 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 773 / 0 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.012G100800 [exp] 85 / 5e-18 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.015G099000 [exp] 77 / 3e-15 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.014G153500 [exp] 64 / 1e-10 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G229100 [exp] 63 / 2e-10 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.010G031900 [exp] 45 / 8e-05 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 45 / 9e-05 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.009G120200 [exp] 44 / 0.0002 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Lus10022666 pacid=23178651 polypeptide=Lus10022666 locus=Lus10022666.g ID=Lus10022666.BGIv1.0 annot-version=v1.0 ATGCTTCCTCGGAAGAGAGCTGGTGGAGGAGAGGTTGCAGTTGAAGGAGAAGGACGGCCAATCCATAGCGCCACCACCGAATCGCTAGTCAAGAAGCACC GCTTTGATTCCGCCGGATCGCAAACAACCACCGCCACTACTGCGGATGCCGTCAACAACAGCAGCAGCAGCAACTCGGGAAGTAGCTTGGACGCTAGCAG GGACACCGACATGACTCTTGGAAACGGAAATCCGCAGGAAATTGATGAAGATCTGCACAGCCGTCAGCTCGCTGTGTATGGCCGTGAGACAATGCGGCGG CTGTTTGCTTCCAATGTCCTCATATCGGGGATAAATGGACTCGGTGCTGAGATCGCCAAGAACCTTGTTCTAGCTGGAGTCAAGTCTGTTACTTTGCACG ATGAAGGACTGGTTGAGAAATGGGATCTGTCCAGCAATTTTGTCTTCTCTGAGGGTGACGTCGGGAAGAATAAGGCACTTGCTTGTGTCCAGAAGCTACA AGAACTCAACAACTCCGTTGTGATTTCCACCTTAACTGCCCCACTGAAGAAGGAGCAACTGTCTGATTTCCAGGCTGTTGTATTCACTGATAGCAGCTTA GAAAAAGCTATCGAGTTTGATGATTACTGCCGCGCTCATCAACCACCCATTGCTTTCATCAAATCTGAAGTCCGGGGCCTTTTTGGTAGTGTGTTCTGTG ACTTCGGCCCTGAATTCACTGTTTTTGATGTTGATGGCGAGGATGCCCATACAGGCATAATTGCTTCGATCAGCAATGATAACCCTGCCCTCATAGCTTG TGTTGATGATGAGAGGGTGGAGCTTCAAGATGGTGACTTGGTTGTTTTCTCTGAAGTAGAGGGTATGGTTGAACTAAATGATGGGAAGCCAAGGAAGGTT AAGAATGCTAGACCCTATTCATTTAACATTGAGGAGGACACCACAAAATTTTCTGCTTATATCAAAGGTGGCATTGTCACACAAGTGAAGCAACCAAAGG TTTTGAGCTTCAAGTCTTTGCGAGATGCAATCAAGGAACCTGGCGATTTCCTTTTGAGCGACTTCTCCAAGTTTGATCGTCCACCTCTCTTGCACTTGGC ATTCCAGGCACTGGATAAGTTTGTTGCAGAGTTGGGTCGCTATCCAGTTGCTGGATCAGAGGATGATGCTCAGAATTTTTTTTCGTTGGTTTGTAATATC AATGATAATGCAGGTGATGGTAGGATTGAAGAGATTGACCAGAAGATTCTTCGCCACTTTGCTTTTGGTGCAAGAGCTGTGCTGAATCCTATGGCTGCCA TGTTTGGTGGACTTGTTGGACAGGAGGTTGTGAAGGCTTGCTCTGGGAAGTTCCACCCGCTATTCCAGTTTTTCTACTTCGACTCAGTTGAATCGCTCCC GACAGAACCCTTGGATCCCAATGACCTGAAGCCCTTAAACAGTCGCTATGATGCTCAGATTTCAGTTTTGGGTGCTAAGCTTCAGAAGAAAATGGAAGAT GCAAAAGTGTTTATGGTAGGCTCTGGTGCGCTTGGTTGTGAGTTTCTGAAGAACTTAGCTTTGATGGGGGTCGCATGTGGTAAACAAGGATGA
AA sequence Show only first row Show all	>Lus10022666 pacid=23178651 polypeptide=Lus10022666 locus=Lus10022666.g ID=Lus10022666.BGIv1.0 annot-version=v1.0 MLPRKRAGGGEVAVEGEGRPIHSATTESLVKKHRFDSAGSQTTTATTADAVNNSSSSNSGSSLDASRDTDMTLGNGNPQEIDEDLHSRQLAVYGRETMRR LFASNVLISGINGLGAEIAKNLVLAGVKSVTLHDEGLVEKWDLSSNFVFSEGDVGKNKALACVQKLQELNNSVVISTLTAPLKKEQLSDFQAVVFTDSSL EKAIEFDDYCRAHQPPIAFIKSEVRGLFGSVFCDFGPEFTVFDVDGEDAHTGIIASISNDNPALIACVDDERVELQDGDLVVFSEVEGMVELNDGKPRKV KNARPYSFNIEEDTTKFSAYIKGGIVTQVKQPKVLSFKSLRDAIKEPGDFLLSDFSKFDRPPLLHLAFQALDKFVAELGRYPVAGSEDDAQNFFSLVCNI NDNAGDGRIEEIDQKILRHFAFGARAVLNPMAAMFGGLVGQEVVKACSGKFHPLFQFFYFDSVESLPTEPLDPNDLKPLNSRYDAQISVLGAKLQKKMED AKVFMVGSGALGCEFLKNLALMGVACGKQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	0	1
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	1.7	0.9566
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	2.4	0.9536
AT3G50370			unknown protein		Lus10019351 [exp]	4.2	0.9383
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	5.1	0.9224
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	5.7	0.9329
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	6.0	0.9227
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	6.6	0.9042
AT3G50370			unknown protein		Lus10009355 [exp]	8.7	0.9363
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	8.8	0.9349
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	9.2	0.9176

Compare expression of checked genes

Lus10022666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.