Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63640 409 / 2e-140 ENTH/VHS/GAT family protein (.1) AT1G76970 191 / 8e-56 Target of Myb protein 1 (.1) AT4G32760 192 / 1e-54 ENTH/VHS/GAT family protein (.1.2) AT1G21380 188 / 3e-54 Target of Myb protein 1 (.1) AT3G08790 184 / 7e-52 ENTH/VHS/GAT family protein (.1) AT2G38410 150 / 3e-39 ENTH/VHS/GAT family protein (.1) AT5G01760 145 / 3e-38 ENTH/VHS/GAT family protein (.1) AT5G16880 82 / 8e-17 Target of Myb protein 1 (.1.2.3) AT1G06210 65 / 4e-11 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012506 [exp] 704 / 0 AT5G63640 445 / 1e-154 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 190 / 1e-53 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 178 / 2e-49 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 177 / 3e-49 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 177 / 7e-49 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10028649 [exp] 174 / 1e-47 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018948 [exp] 165 / 3e-46 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10029739 [exp] 162 / 2e-44 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 158 / 7e-43 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G138600 [exp] 449 / 1e-156 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 443 / 2e-154 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 443 / 2e-154 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 196 / 5e-56 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 186 / 2e-53 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.006G241000 [exp] 188 / 4e-53 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G106500 [exp] 188 / 4e-53 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.002G075500 [exp] 184 / 2e-52 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 177 / 6e-49 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 86 / 4e-18 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10022667 pacid=23178542 polypeptide=Lus10022667 locus=Lus10022667.g ID=Lus10022667.BGIv1.0 annot-version=v1.0 ATGATGGCATCTGACCTTGTTGACTCTGCGACAAGTGAGAAATTGGTTGAAGTAGACTGGGCCAAGAACATTGAAATTTGTGAACTAATTGCACGTGACC AAAGGCAAGCTAAGGATGTTGTCAAAGCAATTAAAAAGCGTTTTGGGAGTAAGAGTCCTAATGTTCAATTGCATGCAGTGATGTTGCTGGAGATGCTGAT GAACAATATTGGAGAACCTGTCCATCAGCAGGTGATCGATAGTGGCATTTTGGGGATTCTTGTGAAGATAGTTAAGAAAAAGACCGAGTTACCCGTACGA GAGAGGATATTTCTTCTTCTAGATGCTACGCAGACGTCCCTTGGTGGTGCTTCTGGGAAGTTTCCTCAGTATTACTCTGCATACTATGATTTGGTGAGTG CCGGAGTAAAATTTCCCGAAAGATCTCGTGAAGTACCATCAAGTCGTCCTACTTCACAGCCAAACAACAGAGTAAATCAGCCTACTCCGCAGTTGGATAA TGGATCCAGTCGTCCTACAGTACGATCCTCTGATCACAGAACAACACTTACAGAGGAACTTGCAACCTCTAGACAGCAACCAGAGCCTCAAGCTGTTCCG GAGTCTAGTATTCTTCAAAAGGCTGGTAATGCATTAGAAGTATTGAATGAAGTCCTTGACGCTGTTGATTCTCAGAACCCTGAGGCAGCAAAGGATGAGT TCACACTTGATCTTGTGGAGCAGTGTTCTTTCCAAAAGCAAAGAGTAATGCATCTTGTGATGACTTGTCGGGATGAGAAAGTGGTTTCTAGAGCAATTGC ATTAAATGAAGAGCTCCAGAATGTCCTAACCAGACATGACGATCTTCTTGCTGGCAGACCCTTTAACTCAAACAGGTCTAGGGATTCCAGTGTACCTACC TCAACTGAAAACCGTGTTAGTCATGAGGTACACGAGGAGGAAGAAGAAGAAGAAGAAGAAATCGAGCAACTCTCACGAAGGTTACGGAAAGGGAAAGCGT GTGCAAGGCCAGAAGACGAGGAGGCAAACTCAAAGGAGCAAAAACACCAGTTGGGGTTATTCGCAACCTCCCTTCCGCCCAGTGAAATGCTGAACCGGCC CCTGATCCGGCCAGTACAGTCGCCAGAGAGCGGGAGAGATCCTTCAATTGCAGCAGTTTCAATCCCACCTCCACCAGCAAAGCACATGGAGAGGGAGAAA TTCTTCAAGGAAAACAAAGTGGACGGGTCTTCCGTCTCTGGCCATATGAGAGGACTTTCATTACACAGTCGCAATGGCAGCAGTTCTCGTAGCGGAAGCA TAGATTTTGCTGAATAA
AA sequence Show only first row Show all	>Lus10022667 pacid=23178542 polypeptide=Lus10022667 locus=Lus10022667.g ID=Lus10022667.BGIv1.0 annot-version=v1.0 MMASDLVDSATSEKLVEVDWAKNIEICELIARDQRQAKDVVKAIKKRFGSKSPNVQLHAVMLLEMLMNNIGEPVHQQVIDSGILGILVKIVKKKTELPVR ERIFLLLDATQTSLGGASGKFPQYYSAYYDLVSAGVKFPERSREVPSSRPTSQPNNRVNQPTPQLDNGSSRPTVRSSDHRTTLTEELATSRQQPEPQAVP ESSILQKAGNALEVLNEVLDAVDSQNPEAAKDEFTLDLVEQCSFQKQRVMHLVMTCRDEKVVSRAIALNEELQNVLTRHDDLLAGRPFNSNRSRDSSVPT STENRVSHEVHEEEEEEEEEIEQLSRRLRKGKACARPEDEEANSKEQKHQLGLFATSLPPSEMLNRPLIRPVQSPESGRDPSIAAVSIPPPPAKHMEREK FFKENKVDGSSVSGHMRGLSLHSRNGSSSRSGSIDFAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	0	1
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	1.7	0.8527
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	4.7	0.8487
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	5.5	0.7721
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	5.7	0.8119
AT3G05520			Subunits of heterodimeric acti...		Lus10020651 [exp]	6.0	0.7900
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	8.7	0.7943
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	14.7	0.7824
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018425 [exp]	16.2	0.7381
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	17.4	0.7806
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10024002 [exp]	17.7	0.8056

Compare expression of checked genes

Lus10022667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.