Plant FIBer expression Database

Lus10022668 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08880 136 / 2e-40 unknown protein
AT5G01570 105 / 2e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012504
[exp]
180 / 5e-59 AT3G08880 109 / 2e-31 unknown protein
Lus10012505
[exp]
153 / 4e-48 AT5G01570 69 / 8e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G122350
[exp]
173 / 5e-55 AT3G08880 124 / 2e-35 unknown protein
Potri.012G107200
[exp]
85 / 4e-21 AT3G08880 81 / 7e-20 unknown protein
PFAM info
Representative CDS sequence
>Lus10022668 pacid=23178625 polypeptide=Lus10022668 locus=Lus10022668.g ID=Lus10022668.BGIv1.0 annot-version=v1.0
ATGACAGATTCACTTGGGGGAACCGATTTGGAGAAGCTAATATCATGGAGCGACGACCTGGTAGCAGTGTTGAAGAAGCAGACCAGCATTAATGCCTTGG
CTCAGTGTCTTGATCAGTCCAAGGTTCTCCACTCCTCTTGCGATGCGGAATTCGACGAGGTCCACACTTTGGTCGAAGATTATCAGAAGAAGATAGACGA
ATGCAAGCAGAAGACATACAAGGCGAAACTCGAGGCTGTCGATGATGCTGAGATAGAGCTTTTGGAGAAGGAGTTGGAAGCTGAGATTGAAAATGAACTG
GTCAACGGGCAGATTGGGGATTTGGAAAGGAAAAGAGTTTCCATTGAGGAGCAAACCCAAGCTAGGACGAAACTCGACCGAGAAGGGTTGAGAGCACAGA
AGAAGGTTTCAATGTATGCTTCGGTGACGAATATCATTCCGGACTTGGGTGATCGTAACACAATCTCTGGGCATATTGTAGACAGGGAGAAAAGGATGGT
TGAGAAGTTTGAGTTAGACCCGACGGAGATGACTCCATTCGAAACATGCGACAGCATTTGGAAGATGATAAATCTGCAATAG
AA sequence
>Lus10022668 pacid=23178625 polypeptide=Lus10022668 locus=Lus10022668.g ID=Lus10022668.BGIv1.0 annot-version=v1.0
MTDSLGGTDLEKLISWSDDLVAVLKKQTSINALAQCLDQSKVLHSSCDAEFDEVHTLVEDYQKKIDECKQKTYKAKLEAVDDAEIELLEKELEAEIENEL
VNGQIGDLERKRVSIEEQTQARTKLDREGLRAQKKVSMYASVTNIIPDLGDRNTISGHIVDREKRMVEKFELDPTEMTPFETCDSIWKMINLQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G08880 unknown protein Lus10022668
[exp]
0 1
AT3G20740 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDO... Lus10011165
[exp]
3.5 0.8248
AT2G21240 BBR_BPC BPC4, BBR/BPC4,... basic pentacysteine 4 (.1.2) Lus10018060
[exp]
4.5 0.7699
AT1G77470 EMB2810, RFC5, ... replication factor C 5, EMBRYO... Lus10025689
[exp]
4.6 0.7984
AT3G24150 unknown protein Lus10019404
[exp]
7.7 0.7955
AT1G19690 NAD(P)-binding Rossmann-fold s... Lus10024280
[exp]
9.2 0.7846
AT4G35740 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, D... Lus10028387
[exp]
11.6 0.7709
AT5G58003 CPL4 C-terminal domain phosphatase-... Lus10037233
[exp]
14.2 0.7364
AT5G55310 TOP1alpha, TOP1... DNA topoisomerase 1 beta (.1) Lus10032571
[exp]
14.5 0.7659
AT4G21800 QQT2 quatre-quart2, P-loop containi... Lus10040022
[exp]
14.8 0.7990
AT1G69630 F-box/RNI-like superfamily pro... Lus10024695
[exp]
17.3 0.7584

Lus10022668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.