Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00620 528 / 0 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) AT4G00600 416 / 5e-143 Amino acid dehydrogenase family protein (.1) AT2G38660 408 / 4e-139 Amino acid dehydrogenase family protein (.1.2.3.4) AT3G12290 397 / 8e-136 Amino acid dehydrogenase family protein (.1) AT1G07080 164 / 1e-46 Thioredoxin superfamily protein (.1) AT5G01580 161 / 9e-46 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12890 126 / 5e-33 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12870 124 / 3e-32 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 122 / 1e-31 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2) AT4G12900 120 / 5e-31 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012502 [exp] 927 / 0 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10006425 [exp] 602 / 0 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10011368 [exp] 596 / 0 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10017822 [exp] 514 / 0 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10018843 [exp] 514 / 0 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10034187 [exp] 406 / 4e-138 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10043398 [exp] 402 / 1e-136 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10042270 [exp] 172 / 2e-49 AT1G07080 285 / 5e-97 Thioredoxin superfamily protein (.1) Lus10002203 [exp] 171 / 2e-49 AT5G01580 238 / 2e-79 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157100 [exp] 533 / 0 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Potri.006G114100 [exp] 426 / 4e-146 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4) Potri.011G098600 [exp] 392 / 8e-134 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1) Potri.016G122000 [exp] 231 / 2e-72 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1) Potri.006G103000 [exp] 221 / 7e-68 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.016G121900 [exp] 175 / 1e-50 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.009G076200 [exp] 164 / 2e-46 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.016G122200 [exp] 152 / 5e-42 AT1G07080 204 / 3e-65 Thioredoxin superfamily protein (.1) Potri.012G107300 [exp] 150 / 2e-41 AT1G07080 205 / 1e-65 Thioredoxin superfamily protein (.1) Potri.012G107600 [exp] 149 / 7e-41 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF03227 [flax] [poplar] GILT Gamma interferon inducible lysosomal thiol reductase (GILT) CL0603 [flax] [poplar] AA_dh_N PF00763 [flax] [poplar] THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02882 [flax] [poplar] THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022670 pacid=23178506 polypeptide=Lus10022670 locus=Lus10022670.g ID=Lus10022670.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTCTAAACCTATTCCCTCTCTACTCGTTGCAACTTTCTTGATATCAGTTGCTTTCTTTTCTCATTGTTCTGTTGCTTCTTCTTCTGATC AGAAGGTGAATCTCTCAGTTTACTATGAAACACTGTGTCCACCTTGTGCTCAGTTCATAGTTCAAAATCTTATCACCATTTTCAACAATGGCATCATTGA CATTGTCAACCTGAAGCTCATACCTTGGGGGAATGCTCGTCTCAGTGGGACCACGAACAACACCTTCATCTGCCAGAATGGTCCTGATGAATGCGAGTTG AACACAGTCCAAGCTTGCACCATCGACGTCCTGAATAACGTGGACAAAAGCTATGGTCTGATTTCCTGCATGGAGCTGTTTGTACTGGTTGGCCAGCATC GGGATTGGCCTCAATGTTTCTCCACTTTAGGATTGTCTGACAAAGAAATCCTCAGCTGCTCTAACAGTACCAATGGAACCAAGCTTGACATTTTACATAG CCAGGAGACTGCCGGTCTGGTCCCGCCTCGCACGTTCGTGCCATGGGTCCTCGTGAACAATCAGTCGATAGGAAAGGTTCTAATCCCACCCTCGATGCCA AAATCCATTGCAGATTATGGGAATTTCACAACCTATGTATGCAATGAGTATAAAGGCCAGCCTATACCAGATGCCTGCAACAACAGGAACCAGATTACTG TAACGAATTCAGATCTTGATAGTCTAGGGGAAATGAAGCTTTCAATGGCGTCGATGAACTTCACCAACTGTCCATCATCCTCAACCACAGCTCGTCTCTT CCCCTTCGGCTCTTCTGGTGCTGCCGTCTACCTCCGCTGCTCCGTTCCTCGTCAGGCCAAAACCCTCACCGTAAACGCAGCAATAGCTAAGGTGATTGAT GGCAAATTGGTAGCCAAACAGATCAGACAGGAGATTGCAGGTGAAGTTTCAAGAATGAAGGACGCGATCGGCCTCGTTCCTGGTCTAGCAGTCATGCTTG TCGGAGACAGGAAGGACTCGGCGACTTACGTGCGAAACAAGAAGAAAGCTTGTGAATCCGTCGGGATCAATTCCTTCGAAGTTTGCTTGCAGGAGGATTC CGCTGAAGCTGATGTTCTCAAGTTCATCTCGGAATTCAATCGTGATCCTGCAGTCCATGGCATTCTTGTCCAGCTTCCCCTACCAAAGCATATGAACGAA CAGACCATCTTGAATGCGGTCAGCATTGAGAAAGACGTGGACGGTTTCCACCCCTTGAACATTGGCCGTCTAGCGATGCGTGGAAGGGAACCGCTGTTTG TACCTTGTACTCCGAAAGGGTGTATCGAGTTGTTGCACAGGTACGGGGTTCCAATCAAAGGGAAGCGAGCGGTTGTGATTGGCCGCAGCAATATCGTCGG GATGCCTGCTGCTCTATTGCTTCAGAGGGAGGATGCTACCGTTACTATCGTGCATTCAAGGACGAGTAATCCCGAAGAGATAGTGAAAGAAGCAGACATT GTGATCTCTGCAGTAGGCCAACCTAACATGGTGAGAGGGAGCTGGCTAAAGCCCGGTGCTGTTGTCATTGATGTTGGTATCAATCCGGTTGAGGACGCGA CATGTCCTCGAGGTTACAGGTTGGTTGGGGATGTGTGCTACGAGGAGGCTAGCGAAGTGGCGTCAGCAGTGACTCCGGTACCTGGGGGAGTCGGTCCGAT GACCATAGCAATGCTTCTTTCGAATACCCTCACCTCAGCAAAGAGAATACACAGCTTCCAGTGA
AA sequence Show only first row Show all	>Lus10022670 pacid=23178506 polypeptide=Lus10022670 locus=Lus10022670.g ID=Lus10022670.BGIv1.0 annot-version=v1.0 MASSSKPIPSLLVATFLISVAFFSHCSVASSSDQKVNLSVYYETLCPPCAQFIVQNLITIFNNGIIDIVNLKLIPWGNARLSGTTNNTFICQNGPDECEL NTVQACTIDVLNNVDKSYGLISCMELFVLVGQHRDWPQCFSTLGLSDKEILSCSNSTNGTKLDILHSQETAGLVPPRTFVPWVLVNNQSIGKVLIPPSMP KSIADYGNFTTYVCNEYKGQPIPDACNNRNQITVTNSDLDSLGEMKLSMASMNFTNCPSSSTTARLFPFGSSGAAVYLRCSVPRQAKTLTVNAAIAKVID GKLVAKQIRQEIAGEVSRMKDAIGLVPGLAVMLVGDRKDSATYVRNKKKACESVGINSFEVCLQEDSAEADVLKFISEFNRDPAVHGILVQLPLPKHMNE QTILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYGVPIKGKRAVVIGRSNIVGMPAALLLQREDATVTIVHSRTSNPEEIVKEADI VISAVGQPNMVRGSWLKPGAVVIDVGINPVEDATCPRGYRLVGDVCYEEASEVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHSFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	0	1
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	1.4	0.7986
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	3.0	0.8533
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	3.3	0.7656
AT1G57540			unknown protein		Lus10029982 [exp]	8.1	0.7275
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	8.4	0.7520
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	13.4	0.7939
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	13.5	0.7600
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	14.4	0.7950
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	14.7	0.7874
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	14.9	0.7834

Compare expression of checked genes

Lus10022670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.