Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20650 138 / 1e-42 COPT5 copper transporter 5 (.1) AT5G59040 55 / 5e-10 COPT3 copper transporter 3 (.1) AT2G26975 51 / 8e-09 Ctr copper transporter family (.1) AT2G37925 44 / 4e-06 COPT4 copper transporter 4 (.1) AT3G46900 42 / 3e-05 COPT2 copper transporter 2 (.1) AT5G59030 41 / 7e-05 COPT1 copper transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012501 [exp] 224 / 1e-76 AT5G20650 177 / 5e-58 copper transporter 5 (.1) Lus10007092 [exp] 142 / 3e-44 AT5G20650 169 / 6e-55 copper transporter 5 (.1) Lus10040925 [exp] 111 / 5e-32 AT5G20650 142 / 2e-44 copper transporter 5 (.1) Lus10009819 [exp] 108 / 6e-31 AT5G20650 147 / 5e-46 copper transporter 5 (.1) Lus10016464 [exp] 56 / 3e-10 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10040726 [exp] 50 / 4e-08 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10021108 [exp] 49 / 2e-07 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10021107 [exp] 46 / 9e-07 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017204 [exp] 44 / 2e-06 AT5G59030 88 / 3e-23 copper transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140700 [exp] 164 / 8e-53 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 134 / 4e-41 AT5G20650 140 / 1e-43 copper transporter 5 (.1) Potri.006G093300 [exp] 51 / 2e-08 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.009G038700 [exp] 50 / 4e-08 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093200 [exp] 47 / 3e-07 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.009G038800 [exp] 47 / 3e-07 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 43 / 1e-05 AT5G59030 134 / 9e-41 copper transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10022671 pacid=23178672 polypeptide=Lus10022671 locus=Lus10022671.g ID=Lus10022671.BGIv1.0 annot-version=v1.0 ATGCACATGACGTTCTACTGGGGAACCAAAGTAACCCTCCTAATCGATTCATGGAAGACGGATTCTTTACTCTCCTACCTCCTCACTCTGCTCGCCTGCT TCCTCTTCTCCGCCTTCTACCAGTACCTCGAAGATCGCCGTATCCGATTCAAGTCCCTTTCTTCTTTTTCATCCGCAACCCAACCGCCGCCGTCAGTCGA CGCTCCTCTCCTCCAGCTTCCCGAGCTCAATAGCAGCAGTCCGACCACCAAGTTTTTAGGAGCCCTACTGTTTGGAGTCAACTCCGCGATCGGCTACTTG TTGATGCTCGCCGTCATGTCTTTCAACGGCGGCGTCTTCGTTGCTGTAGTCCTCGGCTTGACGATCGGGTACTTGTTGTTCCGATGCGGCGGAGACGAGG AGGAGGTCGTCGTCGCTGTGGATAATACCTGCGCTTGTGCCTGA
AA sequence Show only first row Show all	>Lus10022671 pacid=23178672 polypeptide=Lus10022671 locus=Lus10022671.g ID=Lus10022671.BGIv1.0 annot-version=v1.0 MHMTFYWGTKVTLLIDSWKTDSLLSYLLTLLACFLFSAFYQYLEDRRIRFKSLSSFSSATQPPPSVDAPLLQLPELNSSSPTTKFLGALLFGVNSAIGYL LMLAVMSFNGGVFVAVVLGLTIGYLLFRCGGDEEEVVVAVDNTCACA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	0	1
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	1.4	0.8866
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	3.7	0.8845
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	4.2	0.8501
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	4.9	0.8663
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	5.0	0.8633
AT4G10810			unknown protein		Lus10023038 [exp]	5.2	0.8672
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	5.7	0.8323
AT2G27180			unknown protein		Lus10008446 [exp]	6.0	0.8364
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	6.9	0.8545
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	7.2	0.8364

Compare expression of checked genes

Lus10022671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.