Plant FIBer expression Database

Lus10022672 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01590 575 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012500
[exp]
808 / 0 AT5G01590 644 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G123900
[exp]
583 / 0 AT5G01590 689 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10022672 pacid=23178564 polypeptide=Lus10022672 locus=Lus10022672.g ID=Lus10022672.BGIv1.0 annot-version=v1.0
ATGGGGTCAATCAACTTCAACTTCTTCGACAAAAATTGGTTCAACAAGCCACCGAACCCACTCACTCCAGTCAACTTATTCTCTCTAGTCAACTCCTTCA
CTCCCAAACGGACAAACTCCCGAGCCGCCTTCGCTTCCATCACCGCCGCAAATCTTTCCGACGCTAAGAAGCCCGATGAGAAGAAGCCTCCGGAGGAGCA
AAACTACTACAAGCAGATGGTGGACCAGTACTTCTGGGAGTGCGAGAACGACCCGGACTACCGGCACGCGCCTGAAGTGGAGAAGATACTGAGCGACGAT
CCTTTCCAGGAGAAGAAGGAGAATCCTAGGTCGGAGGAGGTGAAGGAGAACGAGGAGTGGTGGAAAGAGTTCAAGTCCAGTCCGATGGTTGAGTTCTGGT
CCAGAGTTAACCAGATTGACGACACGATCAACCAGATCGAGCTGAATGAGAACGACGAGCCGTGCAATTGGGAGGATTCCGATCAATGGCAGGCGGTGCC
TCACGTTCCCGGCCTGGATGGACGGCCGATGCCGAGGAAGGCGATCAAGTCGGAGAGTGAGCGTGAGGATAAGTTTTGGGACTTTACGAGGCAGTTCTTC
TTGGGGCTATGGGGGTTTAAGCAGAGACCTTATCCGCCTGGGAGGCCGATTGATGTTGCTCAGGCGGTTGGTTACAAGCAGTTGGAGAGACGCTACTATG
ACTTTATCATGAGAAGTGGTGGATTTTTCTACAAGGATCGGTTGGGAAGAACAAGAGGGCCTATGGAGCTGATACAGCTGCAAACTGCTTGGGGTCATGG
GATAATTGACAAAAACACTTTCTTATGGATGGAAGATATGGACGAATGGGCTCCGATTCATATGATCTACGGGATGGAACCCGCCATTGCCACTTGGGAC
GCTAGATTGAACGCATCGTGGACAGCGTTTTACCATAAACTTATTCACGGGATACCGACATCGACACCTGTCAAGGGGCACGAGCCGAAGACATATAAGC
AGTTACAACAAGAGGCTATAGAGAGCAGGAAAAGGGACTTGGCAGTTCTGAAAGCTAACGAGGGCGTTTGGCCTGGAGTTAGAACTCCCAGCCATGCCTT
ATTCCTTTGGGCTAGCGGTCCTGAACTCACTCCTACTTTGGAACAAGACCATATGCCTAACAAATTCATACCTAGAGAGCTAAGAGATCGGTTGGCTAAG
ATCATCCCTGGGTTAAGGCCTTGGGAGGTCTTGAGTGTCGAGCAAGCAATGGATCAAATAACGTACGGTAGAGGGTGGTACCGCGAGCCTCTAGGCTCGT
ACATGACAGGGCCTCCGTACATCAGGCAATGGAACAAGGATGTTATGGTGCGTGTTTGGTGGCTCTCTGTAGCTAAGTTAGTAAGGTAA
AA sequence
>Lus10022672 pacid=23178564 polypeptide=Lus10022672 locus=Lus10022672.g ID=Lus10022672.BGIv1.0 annot-version=v1.0
MGSINFNFFDKNWFNKPPNPLTPVNLFSLVNSFTPKRTNSRAAFASITAANLSDAKKPDEKKPPEEQNYYKQMVDQYFWECENDPDYRHAPEVEKILSDD
PFQEKKENPRSEEVKENEEWWKEFKSSPMVEFWSRVNQIDDTINQIELNENDEPCNWEDSDQWQAVPHVPGLDGRPMPRKAIKSESEREDKFWDFTRQFF
LGLWGFKQRPYPPGRPIDVAQAVGYKQLERRYYDFIMRSGGFFYKDRLGRTRGPMELIQLQTAWGHGIIDKNTFLWMEDMDEWAPIHMIYGMEPAIATWD
ARLNASWTAFYHKLIHGIPTSTPVKGHEPKTYKQLQQEAIESRKRDLAVLKANEGVWPGVRTPSHALFLWASGPELTPTLEQDHMPNKFIPRELRDRLAK
IIPGLRPWEVLSVEQAMDQITYGRGWYREPLGSYMTGPPYIRQWNKDVMVRVWWLSVAKLVR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G01590 unknown protein Lus10022672
[exp]
0 1
AT3G17970 ATTOC64-III translocon at the outer membra... Lus10009050
[exp]
1.7 0.9134
AT4G33760 tRNA synthetase class II (D, K... Lus10035657
[exp]
1.7 0.8977
AT1G79560 EMB36, EMB156, ... EMBRYO DEFECTIVE 36, EMBRYO DE... Lus10031169
[exp]
4.0 0.8988
AT1G79560 EMB36, EMB156, ... EMBRYO DEFECTIVE 36, EMBRYO DE... Lus10031745
[exp]
6.0 0.8920
AT3G17830 Molecular chaperone Hsp40/DnaJ... Lus10031908
[exp]
8.4 0.8671
AT1G59990 RH22, EMB3108 RNA helicase 22, EMBRYO DEFECT... Lus10029196
[exp]
8.8 0.8874
AT4G09730 RH39 RH39 (.1) Lus10017781
[exp]
9.8 0.8897
AT3G51140 Protein of unknown function (D... Lus10041816
[exp]
10.5 0.8759
AT1G55930 CBS domain-containing protein ... Lus10003111
[exp]
10.5 0.8917
AT5G49910 CPHSC70-2EATSHO... HEAT SHOCK PROTEIN 70-7, chlor... Lus10039044
[exp]
13.2 0.8538

Lus10022672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.