Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01600 284 / 5e-97 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) AT2G40300 269 / 7e-91 ATFER4 ferritin 4 (.1) AT3G11050 266 / 7e-90 ATFER2 ferritin 2 (.1) AT3G56090 251 / 9e-84 ATFER3 ferritin 3 (.1) AT3G61010 73 / 2e-14 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012499 [exp] 426 / 6e-153 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10012233 [exp] 357 / 1e-125 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10002865 [exp] 355 / 5e-125 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10007523 [exp] 273 / 1e-92 AT2G40300 360 / 4e-127 ferritin 4 (.1) Lus10017433 [exp] 271 / 1e-91 AT2G40300 366 / 3e-129 ferritin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G124700 [exp] 303 / 3e-104 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.006G103900 [exp] 299 / 8e-103 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.016G124900 [exp] 291 / 1e-99 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.008G072700 [exp] 283 / 4e-96 AT3G11050 330 / 9e-115 ferritin 2 (.1) Potri.010G184500 [exp] 280 / 3e-95 AT3G11050 311 / 2e-107 ferritin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF00210 [flax] [poplar] Ferritin Ferritin-like domain
Representative CDS sequence Show only first row Show all	>Lus10022673 pacid=23178550 polypeptide=Lus10022673 locus=Lus10022673.g ID=Lus10022673.BGIv1.0 annot-version=v1.0 ATGTCTTTGAGAGCTTCTCCGTCTTCGTCTCCCATTTTCTCCGGCCAATTCGCTGCTTCTGAGCTCAGCCCTTCTCCCCTTTCGTCGAATTCCGTTCTGG GTTTCCCTCAGAAGAAGGAGAAACGTGTCGGATCACTGCTTGCTTGCGCCGCCGCCGGCGAAGTCAACTCGGCGTTGACTGGTCTAGTGTTTCAGCCATT TGAAGAAGTGAAAAGGGAAGAGTTCATGGTTCCCATTTCTCCTCAGGCTTCTTTAGCTCGCCAGCACTTCGGCGACGAGTGTGAATCAGCGATCAACGAG CAGATCAATGTGGAGTACAATGCTTCGTACATATACCATTCGCTGTACGCGTATTTCGACAGGGACAACGTTGCTCTGAAAGGCTTCGCAAAGTTTTTCA AAGAATCTAGTGAGGAAGAAAGGGGGCATGCTGAAAAGCTTATGGAGTATCAGAACGTCCGTGGAGGGAGAGTGAAGTTGCATTCGATTCTGATGCCTCC TTCTGAGTTTGAGCATGTTGAAAAGGGAGATGCTTTGTATGCAATGGAACTGGCGCTGTCTTTAGAGAAATTGGTCAACGAGAAGCTGCTAAACCTGCAC GCTGTTGCATCAAAGAACAATGATCCACAGACTGCAGAGTTTGTTGAGAGGGAGTTCCTCGATGAACAGGTGCAATCTATCAAGAAGATATCAGATTATG TCACCCAGTTGAGGCTGGTTGGGAAAGGCCACGGAGTGTGGCACTTTGACCAGAAGCTTCTCCATTGA
AA sequence Show only first row Show all	>Lus10022673 pacid=23178550 polypeptide=Lus10022673 locus=Lus10022673.g ID=Lus10022673.BGIv1.0 annot-version=v1.0 MSLRASPSSSPIFSGQFAASELSPSPLSSNSVLGFPQKKEKRVGSLLACAAAGEVNSALTGLVFQPFEEVKREEFMVPISPQASLARQHFGDECESAINE QINVEYNASYIYHSLYAYFDRDNVALKGFAKFFKESSEEERGHAEKLMEYQNVRGGRVKLHSILMPPSEFEHVEKGDALYAMELALSLEKLVNEKLLNLH AVASKNNDPQTAEFVEREFLDEQVQSIKKISDYVTQLRLVGKGHGVWHFDQKLLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	0	1
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	1.0	0.9315
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012499 [exp]	1.7	0.9104
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	2.6	0.8652
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	3.7	0.9174
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10019227 [exp]	4.9	0.8582
AT5G04000			unknown protein		Lus10018038 [exp]	7.5	0.8304
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10020700 [exp]	7.7	0.8495
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	9.2	0.8721
AT2G38860		YLS5	Class I glutamine amidotransfe...		Lus10014721 [exp]	9.4	0.8480
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10028997 [exp]	9.6	0.8242

Compare expression of checked genes

Lus10022673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.