Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) AT5G37070 264 / 2e-91 Protein of unknown function, DUF538 (.1) AT5G01610 263 / 5e-91 Protein of unknown function, DUF538 (.1) AT2G03350 152 / 6e-47 Protein of unknown function, DUF538 (.1) AT5G16380 62 / 6e-12 Protein of unknown function, DUF538 (.1) AT3G07470 56 / 7e-10 Protein of unknown function, DUF538 (.1) AT3G07460 50 / 8e-08 Protein of unknown function, DUF538 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002862 [exp] 303 / 2e-106 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10012232 [exp] 300 / 2e-105 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 239 / 3e-82 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10030420 [exp] 151 / 2e-46 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10026639 [exp] 150 / 2e-46 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 131 / 7e-39 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 126 / 9e-37 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 73 / 3e-16 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 54 / 7e-09 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104000 [exp] 263 / 5e-91 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.016G125300 [exp] 260 / 1e-89 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.010G162400 [exp] 161 / 1e-50 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.008G092500 [exp] 157 / 5e-49 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 70 / 5e-15 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 69 / 7e-15 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 69 / 9e-15 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 39 / 0.0007 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10022674 pacid=23178646 polypeptide=Lus10022674 locus=Lus10022674.g ID=Lus10022674.BGIv1.0 annot-version=v1.0 ATGGATCAGATACTCAACAAGGTCGGCTCCTATTGGTTCAATCGAAAGGCCAACAAGGAACTCAACTCCGTCGGAAACGATATCAACGTACGGTACCGCT TTCTCTTCCATCCTCCATTGAAATCCGTAGCTGTTTGCTGCTCGATAGCACCTAGAACTTGCCAATCATTGTCTGATAGTATCGGCGGAGGAGCAAGATG GATAGTCAACAAAATCAAAGGAACGATGCAGAAGCCATTGCCGGAACTGCTAAAGGAGCACGACTTACCCGTAGGAATCTTCCCCCGTGACGCCACCAAC TATGAGTTCGACGAAGAGACATGCCGGCTAACCGTCTTCATCCCTCAAATATGTGATGTCGGGTACAAGGACTCGTCCGTGCTTCGATTCTCCACCACCG TGACCGGCTATCTCGAAAAGGGGAGACTGTCCAATTTGGAAGGGATGAAGACTAAGGTGATGATTTGGGTTAAAGTGACTTGTGTAACGTCCGAGGGATC CAAGGTTCATTTCACTGGTGGAATGAAGAAAAGCAGGAGCAGAGATGCTTACGAGGTTCTTCGTGATGGATTCCGTATAGAGAAGTTCTAA
AA sequence Show only first row Show all	>Lus10022674 pacid=23178646 polypeptide=Lus10022674 locus=Lus10022674.g ID=Lus10022674.BGIv1.0 annot-version=v1.0 MDQILNKVGSYWFNRKANKELNSVGNDINVRYRFLFHPPLKSVAVCCSIAPRTCQSLSDSIGGGARWIVNKIKGTMQKPLPELLKEHDLPVGIFPRDATN YEFDEETCRLTVFIPQICDVGYKDSSVLRFSTTVTGYLEKGRLSNLEGMKTKVMIWVKVTCVTSEGSKVHFTGGMKKSRSRDAYEVLRDGFRIEKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	0	1
AT2G34540			unknown protein		Lus10042827 [exp]	2.8	0.8226
AT5G46030			unknown protein		Lus10015293 [exp]	3.3	0.8718
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	4.6	0.8233
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	9.9	0.8214
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	12.2	0.8547
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	13.0	0.8165
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	13.2	0.8542
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	14.0	0.8156
AT4G27120			unknown protein		Lus10043066 [exp]	15.2	0.7916
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	16.6	0.8245

Compare expression of checked genes

Lus10022674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.