Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38320 525 / 0 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G01620 414 / 2e-142 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G40320 378 / 7e-129 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT2G40150 369 / 5e-125 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT3G11030 364 / 5e-123 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT1G73140 358 / 3e-121 TBL31 Plant protein of unknown function (DUF828) (.1) AT3G55990 352 / 7e-118 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT5G01360 335 / 7e-112 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40160 318 / 4e-105 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G58600 259 / 2e-82 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014238 [exp] 725 / 0 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10009839 [exp] 364 / 4e-123 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10002858 [exp] 359 / 7e-123 AT5G01620 510 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10040953 [exp] 363 / 2e-122 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10012229 [exp] 353 / 1e-120 AT5G01620 509 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10030396 [exp] 350 / 2e-117 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 349 / 5e-117 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 348 / 2e-116 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 329 / 1e-109 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125500 [exp] 589 / 0 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.016G125600 [exp] 409 / 1e-140 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.008G073300 [exp] 367 / 1e-124 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 365 / 1e-123 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187600 [exp] 351 / 2e-117 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 343 / 6e-115 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G069900 [exp] 343 / 3e-114 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 336 / 2e-112 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G376700 [exp] 335 / 3e-112 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 321 / 4e-106 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10022676 pacid=23178600 polypeptide=Lus10022676 locus=Lus10022676.g ID=Lus10022676.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGATGATGACAGTAGCATCACAGGTCAAAGGCAGTAGCTTTGTTCTGTCTCCTTTCATGACAATGGGAGTTAGGAGCACTTTCCATTCCT TGGTAGCTCTGCTCCTCACTTTCCTCCTCGTTGTTGCCGTTTACCTCACACAAACCCGCTCCAACCTCCTCGAGGATGGCAGTATAGCCTCCTCCTCCGT GTCGATCAGGTGCAACCTGTTTGAGGGGAAGTGGGTTTTCGACAACCGGTCATACCCTTTGTACAAGGAAAAAGATTGCAGCTTCATGTCGGATCAGCTG GCGTGCCAGAAGTTCGGGAGGAAGGATATGGAGTATCAGAACTGGAGATGGCAGCCAAACCAATGCGACATTCCCAGATTTAATGCTACAGTGTTGCTGG AGAGGCTAAGGAACAAGAGGCTAGTGTACGTTGGAGATTCATTGAACAGAGGCCAGTGGGTTTCAATGGTTTGTCTTGTGGATTCTTCAATTCCAACTGG ACTCAAGTCTATGGACCAGAAGCTTAATGGGTCTTTGATGGTCTTTAAAGCTAAGGAATTCAACGCGACGATAGAGTTCTACTGGGCGCCGTTGCTAGTG GAATCAAACTCCGACGACCCGGTCAGCCATCGGGTTCCAGACAGGATCGTTCGAGTGCAGGGGATCGAAAAGCACGCCAAGTATTGGACTGATGCTGATG TCCTTGTTTTCAACAGTTACCTCTGGTGGCGTCGTTCCGAAATGAAAGCTCTGTGGGGTTCATTTGCAAATCCTGACGATGCGGTAGTGAAAGAAGTGAA GATGCCACGAGTCTACGAAATGGCTCTTCAGACTTGGGCCGATTGGTTGGAAGTCCATGTCAATCGAACCAAAACCCAACTCTTCTTTGTCAGCATGTCA CCAACCCACGAAGTAGCAAAGGAATGGGGAGGAGGAGATTCAGGCCAAAACTGCTATGGCGAAAGGGTACCGATATTCGAGCAAGGGTACAGAGGGAAAT CCACCTGCAAAGAGATGATGCAAGTGGTTGAATCGGTTCTTGGTGGGTTGAAAAGCAGAGGGATGAAGATGGAGATGATCAACATAACACAGCTGACAGA GTACAGAAAAGAAGGCCACCCTTCGATCTACAGGAAGCAATGGGAGCCATTGAAAGAGGAAGAGAGACTGAATCCCAGTAGCTATGCAGATTGCATACAC TGGTGTCTACCTGGTGTCCCTGATGTTTGGAACGAGATCCTTTATAGCTACATCTTGGGTTTGTGA
AA sequence Show only first row Show all	>Lus10022676 pacid=23178600 polypeptide=Lus10022676 locus=Lus10022676.g ID=Lus10022676.BGIv1.0 annot-version=v1.0 MAAAMMTVASQVKGSSFVLSPFMTMGVRSTFHSLVALLLTFLLVVAVYLTQTRSNLLEDGSIASSSVSIRCNLFEGKWVFDNRSYPLYKEKDCSFMSDQL ACQKFGRKDMEYQNWRWQPNQCDIPRFNATVLLERLRNKRLVYVGDSLNRGQWVSMVCLVDSSIPTGLKSMDQKLNGSLMVFKAKEFNATIEFYWAPLLV ESNSDDPVSHRVPDRIVRVQGIEKHAKYWTDADVLVFNSYLWWRRSEMKALWGSFANPDDAVVKEVKMPRVYEMALQTWADWLEVHVNRTKTQLFFVSMS PTHEVAKEWGGGDSGQNCYGERVPIFEQGYRGKSTCKEMMQVVESVLGGLKSRGMKMEMINITQLTEYRKEGHPSIYRKQWEPLKEEERLNPSSYADCIH WCLPGVPDVWNEILYSYILGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	3.2	0.8977
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	3.5	0.8963
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	6.0	0.8677
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	7.3	0.7903
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	7.7	0.8668
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	8.1	0.7844
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	9.6	0.8746
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	11.0	0.7805
					Lus10025897 [exp]	11.5	0.8628
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	12.2	0.8250

Compare expression of checked genes

Lus10022676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.