Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08780 285 / 3e-95 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014237 [exp] 563 / 0 AT3G08780 311 / 2e-105 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126200 [exp] 292 / 4e-98 AT3G08780 263 / 6e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022677 pacid=23178683 polypeptide=Lus10022677 locus=Lus10022677.g ID=Lus10022677.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGAAACGATCTCCCGCTACAGAAAGTAGCGATCTTTGGCCCCACATTAGCCTCCATGATGCAGCGTTTCTCCTCCGCAATCGGCGACGTGG ACGGCCTTCTCTTCGGCCACGTAACGCACCTCGCTCCAACTCTCTCCGACGACGATCCTCCCAAAACCTCCTCCGATTCGCCGGAACTCGTCGCCACAAT CACTTCCTTCATCTGCCCCAACTCAACCCTCTCCTTCTACGATTCCCTCGGCCGCGTCAATTCGGCCTCCCTCCAGCGGCTGCTCCTCGCCGCACATCCC GACCGCCACCGGCAGCACCTCCTCGGCTGGTTCTCCGCTCGGCGGAGGACGCCGATTCGGCCTTCGATGCGTGAGTTCTCCGTCACGCACTGCCTTTCCA CCAAATCGGAGCTGTCTTCCCCAATCGAGAACGGGGAGAGTCTGAGTAGCCTGGTGAATTTCGCTCCCTGTTTGTTCCTCTTGTTTGCTACCCCGACGCA AGAGCAGTTGATTCACACGCACGACTATAGGGCTTACCAGTTTTTCGGTTCGAAGAAGCGTTTCGAGTCTAAGTCGGTTGATATAGTGAACATTGGCCCT GCGTTTCGAGTGGATTACGGATCGTTCAGCCCTAATTCGCCGTTTCCGTTGTTGAGCTGCGATTTGAGGAGTTCGTCGGCGATGAATGAGGATAATAGGA GTGAGGAAGGTAGTTTGGGGGAGATGAAGAAAGTGGCAAAGGATCAGAAGGAGCTGGATATGTGTGCAGAAGGATATGGAGTTGCTAGCTTGAGTAGATT GATAGGTGAGGAGGCGACTGGTTATACAGCAGGATTGGAGGATATGTATGATAAGATGTTGGTGAAGATTGAGAGCTTGGTTAGGCAAGTGGAGAGTAGC AATGCCAAAGTTCTCCAAATGGAGAATTACAACCGGAAGCTGAGGTACAAAGTTGCAAAGGGTGGAGTTGAATGA
AA sequence Show only first row Show all	>Lus10022677 pacid=23178683 polypeptide=Lus10022677 locus=Lus10022677.g ID=Lus10022677.BGIv1.0 annot-version=v1.0 MAAGNDLPLQKVAIFGPTLASMMQRFSSAIGDVDGLLFGHVTHLAPTLSDDDPPKTSSDSPELVATITSFICPNSTLSFYDSLGRVNSASLQRLLLAAHP DRHRQHLLGWFSARRRTPIRPSMREFSVTHCLSTKSELSSPIENGESLSSLVNFAPCLFLLFATPTQEQLIHTHDYRAYQFFGSKKRFESKSVDIVNIGP AFRVDYGSFSPNSPFPLLSCDLRSSSAMNEDNRSEEGSLGEMKKVAKDQKELDMCAEGYGVASLSRLIGEEATGYTAGLEDMYDKMLVKIESLVRQVESS NAKVLQMENYNRKLRYKVAKGGVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08780			unknown protein		Lus10022677 [exp]	0	1
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	1.7	0.9105
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	2.0	0.8974
AT4G10810			unknown protein		Lus10023038 [exp]	3.5	0.8841
					Lus10010972 [exp]	5.2	0.8880
AT1G71780			unknown protein		Lus10016547 [exp]	6.9	0.8730
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	9.2	0.8572
AT1G16210			unknown protein		Lus10022649 [exp]	9.5	0.8609
					Lus10001957 [exp]	13.0	0.7641
AT3G15610			Transducin/WD40 repeat-like su...		Lus10019450 [exp]	13.7	0.8498
AT1G61040		VIP5	vernalization independence 5, ...		Lus10018476 [exp]	13.9	0.8391

Compare expression of checked genes

Lus10022677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.