Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56100 717 / 0 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G51740 500 / 1e-165 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G26730 307 / 6e-94 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 315 / 4e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G07180 296 / 5e-87 ERL2 ERECTA-like 2 (.1) AT5G62230 295 / 8e-87 ERL1 ERECTA-like 1 (.1.2) AT3G08680 282 / 1e-84 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 278 / 2e-83 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G64210 275 / 8e-83 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 281 / 6e-81 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014236 [exp] 1291 / 0 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 932 / 0 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 898 / 0 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 660 / 0 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10019113 [exp] 292 / 3e-88 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 291 / 9e-88 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 285 / 8e-86 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10031689 [exp] 291 / 6e-85 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 290 / 7e-85 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126300 [exp] 939 / 0 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 912 / 0 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 870 / 0 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G074300 [exp] 311 / 2e-95 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 301 / 4e-92 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 295 / 2e-89 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G130600 [exp] 293 / 6e-89 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 290 / 7e-88 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 288 / 1e-86 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G132200 [exp] 293 / 7e-86 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022678 pacid=23178579 polypeptide=Lus10022678 locus=Lus10022678.g ID=Lus10022678.BGIv1.0 annot-version=v1.0 ATGGACGTCAATGGTTCCAGCATCTTCACCGACTCGTTCTTCTTCTTTACACTACTAGCTTTACTACTAGCCTCACCACTTGCTTCCTCCTCTCAGAAAT GGGACGGAGTTCTCATAACCCAATCCGACTACCAGTCTCTCCGAGCCATTAAAAACGAACTCCTCGATCTTCGGGGAGTCCTCCGGAGCTGGAACGAAAG TGGAGGGGAGGACGGAGTCTGTTCCGGTGGGTGGGCAGGAATCAAATGTGTCAAAGGACGAGTGATCGCCATCCAGCTTCCGTGGAAAGGACTCGGAGGG AAGATATCCGAGAAAATCGGGGAGCTTCCGCAGCTGAGAAGGATCAGCTTGCACGACAATGTGATCGGAGGGAGCATCCCTTCATCGATTGGCTTTCTTC GGAACCTCCGAGGGCTGTACCTTTTCAACAACCGGCTTCGTGGATCCATCCCTCCTTCCATCGGTAACTGCCCCTTCCTCCAAGCTCTTGATGTCGGTAA CAATTCGCTGACCGGTCCGATTCCTCCTAGTTTAGTGAATTTAATGACGTTGTATAGGTTGAACTTGAGCCACAACTCGTTCACAGGATCTATCCCGGTT GGTTATTCCACCTCTGCTTCTCTAGTTTATCTAGCTCTTGAGCATAACAACATATCTGGTTCAATCCCTAATTCCTGGGGAGGAAAAACCAGTAAGAACA ATCCTCATCAGCTCGAGTTCTTGACCCTAAATCATAACCAGATAACTGGAATCTTACCCGACGAACTAGGGAGTGTAACCAGTCTCCAAAAGCTAGATCT TTCCAACAATGATATCAATGGAACCATCCCTTCCAGCTTTCCCAATCTAACCTCTCTAGTATGGCTGAATCTCGAGGGAAATCGCCTTCACGGCCAGATC CCAGAAGCTCTAGACAGGATACTAAACCTCACATTGCTTGACCTGAAAGACAACAACTTCAGCGGAAGAATTCCGGATTCCCTTTCTCATCTGCCGAATC TGGATTCTTTCAACGTGTCCTACAACAGCCTCTCCGGACCTGTCCCGACTCTTCTGGCCAGAAAGTTTGGCTCGAGCTCTTTCGTGGGGAATCTTCAACT ATGTGGCTATAGTTCTTCAGCCCATTTTCCATCATCAGCACCATCGCCCGAGTCTTCGACGAATGCCAGCAGCAGCAAGATTAGCACCAAGTACCTAGTC CTTATAATAGCAGGATCGGTGGTGGCTTTTCTACTTCTACTATGCTGCTGTTTGCTTTGCTGTTTGATGAGGAAAAGAGGCGGGTCAAAGTCAAAGAAGG ATAACATCACAATCCATGGAGCCTCTAAAAAACCAGAGAAGGTAGCTGCAGCTGTTGTATCCCAACCTGGCTATGAAATGGGTGGGAAATTGGTCCATTT CGATGGGCCGTTCATCTTCACAACGGACGATTTGCTCTGTGCAACTGCAGAGATCATGGGGAAGAGCTCATACGGAACTGCATACAAGGCAACATTGGAA GATGGGAATCAAGTTGCTGTGAAGAGATTGAGAGAGAAAACAACAAAGGGGGAGCATGAATTCGAAAGCCAAGTTGCAGCAATGGGGAAGATTCATCACC CGAATCTGCTAGCTCTTCGAGCTTACTACCTGGGGCCGAAAGGCGAGAAGCTGCTGGTTTTCGACTACATGCCTAGAGGAAGCCTTTCATCTTTTTTCCA TGCTCGTTCCCCTGAGAGCATTATCAATTGGCGAACAAGGATGAACATATTCACTGGAATTGCACGAGGACTGAACCATCTCCACACAAAAGAGAACACA ATCCATGGAAATCTTACCTCCAGCAACGTACTCCTCGACGAGCAGTTGAACGCGCACATCGCAGACTTTGGGATCTCCAGTCTCATGACGCTAGCAGCAG CGACGAACGTGATCGCGACAGCCGGGACCCTAGGGTATCGAGCGCCGGAGCTGTCGAAGCTGAAGAACGTCAGCACAAAGACGGACGTCTACAGCCTCGG AGTGATAATTCTGGAGCTGCTGACGGGGAAATCCCCCGGGGAGCCGATCAGCGGCATGGATTTGCCTCGCTGGGTGGCTTCAGTAATGAAGGAAGAGTGG ACGAATGAAGTTTTCGATTTGGAGATCTTAAAAGACATGCCGGAAAACGGCGATGAGCTCCTCAACACTCTGAAGATGGCTTTGCATTGCGTCGATCCGT CGCCGTCGGCTAGGCCGGAAGTTGAGCAGATTCTTGAGCAGCTGATGGAGATCATACCAGAGCTGGCGGGGTCAGCTCATCATCATCAAGCTGAGATCGA CGACGGCGACGGTGTTAAACCTTCACTACCTGCTACCGATTAG
AA sequence Show only first row Show all	>Lus10022678 pacid=23178579 polypeptide=Lus10022678 locus=Lus10022678.g ID=Lus10022678.BGIv1.0 annot-version=v1.0 MDVNGSSIFTDSFFFFTLLALLLASPLASSSQKWDGVLITQSDYQSLRAIKNELLDLRGVLRSWNESGGEDGVCSGGWAGIKCVKGRVIAIQLPWKGLGG KISEKIGELPQLRRISLHDNVIGGSIPSSIGFLRNLRGLYLFNNRLRGSIPPSIGNCPFLQALDVGNNSLTGPIPPSLVNLMTLYRLNLSHNSFTGSIPV GYSTSASLVYLALEHNNISGSIPNSWGGKTSKNNPHQLEFLTLNHNQITGILPDELGSVTSLQKLDLSNNDINGTIPSSFPNLTSLVWLNLEGNRLHGQI PEALDRILNLTLLDLKDNNFSGRIPDSLSHLPNLDSFNVSYNSLSGPVPTLLARKFGSSSFVGNLQLCGYSSSAHFPSSAPSPESSTNASSSKISTKYLV LIIAGSVVAFLLLLCCCLLCCLMRKRGGSKSKKDNITIHGASKKPEKVAAAVVSQPGYEMGGKLVHFDGPFIFTTDDLLCATAEIMGKSSYGTAYKATLE DGNQVAVKRLREKTTKGEHEFESQVAAMGKIHHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFFHARSPESIINWRTRMNIFTGIARGLNHLHTKENT IHGNLTSSNVLLDEQLNAHIADFGISSLMTLAAATNVIATAGTLGYRAPELSKLKNVSTKTDVYSLGVIILELLTGKSPGEPISGMDLPRWVASVMKEEW TNEVFDLEILKDMPENGDELLNTLKMALHCVDPSPSARPEVEQILEQLMEIIPELAGSAHHHQAEIDDGDGVKPSLPATD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	0	1
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009024 [exp]	1.0	0.8965
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	3.5	0.8487
					Lus10026259 [exp]	6.1	0.8052
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	13.7	0.8542
AT5G57120			unknown protein		Lus10001434 [exp]	15.3	0.8121
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	16.0	0.8229
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10028566 [exp]	18.4	0.7863
AT5G66150			Glycosyl hydrolase family 38 p...		Lus10025960 [exp]	20.2	0.8623
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	21.2	0.8114
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	21.5	0.8438

Compare expression of checked genes

Lus10022678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.