Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51740 850 / 0 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56100 660 / 0 IMK3, MRLK meristematic receptor-like kinase (.1) AT5G63930 307 / 2e-90 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 292 / 1e-88 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 281 / 1e-84 RKL1 receptor-like kinase 1 (.1) AT5G53320 274 / 3e-82 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 269 / 3e-80 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 267 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) AT4G36180 272 / 6e-78 Leucine-rich receptor-like protein kinase family protein (.1) AT2G26730 259 / 4e-76 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014235 [exp] 1242 / 0 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 927 / 0 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 910 / 0 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 650 / 0 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10017756 [exp] 323 / 3e-100 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 317 / 1e-97 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 310 / 2e-95 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 310 / 3e-95 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 309 / 6e-95 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126300 [exp] 956 / 0 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 928 / 0 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 899 / 0 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G074300 [exp] 339 / 3e-106 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 323 / 6e-100 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 311 / 5e-96 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 309 / 4e-95 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 305 / 9e-94 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 305 / 9e-94 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G086100 [exp] 277 / 3e-83 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022679 pacid=23178673 polypeptide=Lus10022679 locus=Lus10022679.g ID=Lus10022679.BGIv1.0 annot-version=v1.0 ATGGAATTGGAAAGACACACATTTCCACTCTTCCTCTTCCTCTTCTTAATCTTACTCGCCTCTCGGTTTGCTTCCTCGCAGAAATGGGACGGAGTCATCG TGACTGAATCCGATTACCAGTCCCTCCGAGCGATCAAGAACGAGCTCGTCGATCTCCGGGGAGCGCTCCGGAGCTGGAACGACACTAACGGGGTCGGTGT GTGCTCCGGCGGGTGGGCCGGGATCAAATGCGCCAAGGGACAGGTGATTCTCATCCAGCTTCCGTGGAGAGGGCTCGGCGGTAGGCTGTCGGAAAAAATC GGCCAGCTCCCCGGACTGAGGAGGATCAGCTTCCACGACAATGCGATCGGTGGGACGATCCCTTGGTCTTTGGGGTTTCTACGTAACCTCAGAGGCGTTC ATCTCTTCAACAATCAGCTTCGGGGGTCGATCCCTCCTTCGATCGGTAACTGTCCTGTTCTTCAAGCTTTCGATGTGAGTAACAATTCGCTCACTGGCGC TGTTCCCTGGAGTTTCGTGAAGTCGAACAGGCTGTTCAGGTTGAATCTTAGCCACAATAGCTTGTCCGGTTGGATCCCGGGTAGTCTCTTTAGCTCTCCT TCACTGGTTTTTCTGTCTCTCGACCATAATAATCTATCCGGTCCAATCCCGGAAGCTGAAATTAGCAGTAGTAATCAGCTCCAAAGGCTAGATTTGTCTA ACAATGCCATCAATGGGACGATCCCGGAGAGCTTTTCGAATCTTTCCTCTTTAGTCTGGTTGAATCTGGAATCGAATCTCCTATTCGGCCGAATCCTGGA ATCTGTACTAGATAGAATGCAGAACCTCACAGTGCTTAACCTGAAAAACAACAGATTCCAAGGCCAGATTCCACCAGCTTTATCCAACTTATCCGCCATT ACCCAGCTTGACCTGTCTCAGAACAATTTCAGTGGAGAGATTCCAACTTCCCTTTCTCAGATGTCCAATCTCAACTCATTCAATGTATCCTACAACAATC TCTCCGGACCGGTCCCTTCGGTCCTGGCCCGAAAGTTCAATTCGAGCTCTTTCGTCGGAAATCTTCAGCTTTGTGGATACAGTCCTTCAACTCCTTGCAT TTCACCTGCACCAAGTATTCCTCCTCTGGCACCATCACCGGAGTCTCCAACGAAGCACCATGGCCGAAAGCTAAGCACTCGAGATCTTATCCTTATAATA GCAGGATCTATAGGGGGTTTCCTGCTTCTACTTTGCTGCTGCTTGCTTTGCTGTCTGATGAGGAGAAGAAAAAGCGGCAGCTCAAAGGAGAAGAGTGGTG TTGGTGTAGCTGCTGCTACCCCTGGTAAATCGGAGAAGGCAGCCGATGTCGAATCTGGAGGCGAAATGGGAGGGAAGTTGGTCCATTTCGACGGGCCGTT CATGTTCACAGCTGATGATTTGCTCTGTGCAACTGCGGAGATCATGGGGAAGAGCACTTATGGAACTGCATACAAGGCAACGTTAGAAGATGGGAATCAA GTTGCAGTGAAGAGATTGAGAGAGAAGATAACAAAGGGAGAACGCGAATTCGAGACCGAAGCTGGAGCGATCGGCAAGATTCGACATCCGAATCTGCTAG CTCTTCGAGCTTATTACCTCGGTCCAAAAGGGGAAAAGCTGCTGGTTTTCGATTACATGCCTAGAGGAAGCCTCTCATCTTTCCTCCATGCTCGTGGACC TGAGACGACGATCGATTGGCCTACAAGGATGAACATAATCACAGGAATCACACGAGGACTGAACCATCTCCACACAAGAGAGACCATAATCCACGGAAAT CTCACCTCAAGCAACGTGCTCTTAGACGAGCAGGCGAACGCAAGCATCGCCGACTTCGGAATCTCCAGGCTGATGACTGCCGCCGCGGCCACGAACGTGA TCGCCACAGCGGGAGCGCTAGGGTACAGAGCGCCGGAGCTTTCAAAGCTAAAGAACGCCAGCACGAAGACGGACGTCTACAGCCTCGGAGTGATCATCCT CGAACTGCTGACAGGGAAATCCCCTGCGGAGCCGACTAACGGGCAGGATCTTCCCCGGTGGGTGGCTTCCATCGTGAAGGAAGAGTGGACAAACGAAGTG TTCGATCTGGAGATCTCTAAGGATTTACCGGCGATCGGCGACGAGCTACTCAACACGCTTAAGTTGGCATTGCATTGCGTTGATCCGTCGCCGTCGGCGA GACCTGAGGTTGAGCAAGTTCTTCACCAGCTGGAGGAGATCAAGCCGGAGGTTGCTGTGCCGCCGGCGGTGGCTGCTGAAACAACGGATTAG
AA sequence Show only first row Show all	>Lus10022679 pacid=23178673 polypeptide=Lus10022679 locus=Lus10022679.g ID=Lus10022679.BGIv1.0 annot-version=v1.0 MELERHTFPLFLFLFLILLASRFASSQKWDGVIVTESDYQSLRAIKNELVDLRGALRSWNDTNGVGVCSGGWAGIKCAKGQVILIQLPWRGLGGRLSEKI GQLPGLRRISFHDNAIGGTIPWSLGFLRNLRGVHLFNNQLRGSIPPSIGNCPVLQAFDVSNNSLTGAVPWSFVKSNRLFRLNLSHNSLSGWIPGSLFSSP SLVFLSLDHNNLSGPIPEAEISSSNQLQRLDLSNNAINGTIPESFSNLSSLVWLNLESNLLFGRILESVLDRMQNLTVLNLKNNRFQGQIPPALSNLSAI TQLDLSQNNFSGEIPTSLSQMSNLNSFNVSYNNLSGPVPSVLARKFNSSSFVGNLQLCGYSPSTPCISPAPSIPPLAPSPESPTKHHGRKLSTRDLILII AGSIGGFLLLLCCCLLCCLMRRRKSGSSKEKSGVGVAAATPGKSEKAADVESGGEMGGKLVHFDGPFMFTADDLLCATAEIMGKSTYGTAYKATLEDGNQ VAVKRLREKITKGEREFETEAGAIGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTIDWPTRMNIITGITRGLNHLHTRETIIHGN LTSSNVLLDEQANASIADFGISRLMTAAAATNVIATAGALGYRAPELSKLKNASTKTDVYSLGVIILELLTGKSPAEPTNGQDLPRWVASIVKEEWTNEV FDLEISKDLPAIGDELLNTLKLALHCVDPSPSARPEVEQVLHQLEEIKPEVAVPPAVAAETTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	0	1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	1.0	0.9859
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	1.4	0.9842
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10013766 [exp]	2.4	0.9712
AT5G23910			ATP binding microtubule motor ...		Lus10039243 [exp]	5.5	0.9696
AT3G21620			ERD (early-responsive to dehyd...		Lus10030024 [exp]	6.0	0.9696
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	7.9	0.9657
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	8.8	0.9677
AT1G65710			unknown protein		Lus10031373 [exp]	8.9	0.9569
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10016397 [exp]	9.2	0.9640
AT4G14180		ATPRD1	putative recombination initiat...		Lus10002081 [exp]	9.3	0.9376

Compare expression of checked genes

Lus10022679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.