Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38360 214 / 3e-71 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 187 / 8e-61 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT3G56110 165 / 4e-52 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT2G40380 163 / 2e-51 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G05380 163 / 3e-51 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT5G07110 152 / 7e-47 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT4G00005 110 / 7e-32 PRA1 (Prenylated rab acceptor) family protein (.1) AT1G08770 88 / 4e-22 PRA1.E prenylated RAB acceptor 1.E (.1) AT3G13710 87 / 7e-22 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT3G13720 85 / 4e-21 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002853 [exp] 236 / 8e-80 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10012224 [exp] 226 / 5e-76 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 192 / 3e-62 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 191 / 4e-62 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10014234 [exp] 181 / 4e-59 AT2G38360 164 / 1e-51 prenylated RAB acceptor 1.B4 (.1) Lus10017425 [exp] 174 / 2e-55 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10007533 [exp] 172 / 1e-54 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 169 / 1e-53 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10005088 [exp] 96 / 4e-25 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126400 [exp] 191 / 4e-62 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.006G104400 [exp] 187 / 7e-61 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 180 / 3e-58 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 172 / 4e-55 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.008G074000 [exp] 170 / 4e-54 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 170 / 4e-54 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.005G219100 [exp] 109 / 2e-30 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 101 / 2e-27 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 100 / 1e-26 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G044000 [exp] 97 / 1e-25 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10022680 pacid=23178511 polypeptide=Lus10022680 locus=Lus10022680.g ID=Lus10022680.BGIv1.0 annot-version=v1.0 ATGTCCGACCGATCCGCCTTCTCCAAGCCCGAATCCGTCTCGGAGGCCTCTCTCCGCCTCCGCAAGAACTACACTTACTTCCGCGTCAATTACATGGCCG TCGTCGCCGCGATCGTCGCCTTCTCCTTGCTATCTCATCCGATCTCGCTCATGTTCCTCGTCGGCCTCCTCGCGTCCTGGATCTTCCTCTACCTGTTCCG CCCCGCGGATCAACCGCTTGTGTTCTTCGGACGGAGCTTCACCGACATGGAGACGCTCGGGATCCTCGTCGTGTTCAGCGTTTTCGTCGTCTTCCTCACC AACGTCGGATCCGTGCTCATCTCGGCAGTGATGCTCGGCTCGGCGGTCGTCTGTGCTCATGGATCGTTTAGGATTCCTGAGGATCTGTTCTTGGATGAGC AGGAGCCGTCTGCAGCTACTGGATTCCTCTCGTTCCTTGGTGGTGCCGCGACGAATGTGGCTGCTACGACTGCTGCTCGCGTCTGA
AA sequence Show only first row Show all	>Lus10022680 pacid=23178511 polypeptide=Lus10022680 locus=Lus10022680.g ID=Lus10022680.BGIv1.0 annot-version=v1.0 MSDRSAFSKPESVSEASLRLRKNYTYFRVNYMAVVAAIVAFSLLSHPISLMFLVGLLASWIFLYLFRPADQPLVFFGRSFTDMETLGILVVFSVFVVFLT NVGSVLISAVMLGSAVVCAHGSFRIPEDLFLDEQEPSAATGFLSFLGGAATNVAATTAARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	0	1
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	1.0	0.9762
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	2.4	0.9707
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	2.8	0.9619
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	4.4	0.9547
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	5.2	0.9609
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	5.3	0.9625
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	5.5	0.9642
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	6.0	0.9566
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	6.6	0.9657
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	6.9	0.9605

Compare expression of checked genes

Lus10022680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.