Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01710 639 / 0 methyltransferases (.1) AT5G03190 123 / 2e-30 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT3G53400 123 / 3e-30 unknown protein AT1G24480 87 / 5e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 84 / 5e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G58120 68 / 4e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014232 [exp] 907 / 0 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10012217 [exp] 728 / 0 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10001267 [exp] 725 / 0 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10026502 [exp] 117 / 3e-28 AT3G53400 392 / 1e-133 unknown protein Lus10019932 [exp] 115 / 1e-27 AT3G53400 385 / 1e-130 unknown protein Lus10036941 [exp] 87 / 7e-19 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 87 / 7e-19 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 78 / 7e-16 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 64 / 1e-10 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128100 [exp] 657 / 0 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 636 / 0 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 472 / 1e-163 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G128800 [exp] 133 / 7e-34 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 132 / 1e-33 AT3G53400 420 / 6e-144 unknown protein Potri.010G052100 [exp] 92 / 5e-21 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 85 / 2e-18 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G104500 [exp] 84 / 3e-17 AT1G58120 283 / 1e-91 unknown protein Potri.017G047700 [exp] 81 / 3e-16 AT1G58120 254 / 6e-81 unknown protein Potri.007G113200 [exp] 72 / 2e-13 AT1G58120 252 / 6e-80 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10022682 pacid=23178636 polypeptide=Lus10022682 locus=Lus10022682.g ID=Lus10022682.BGIv1.0 annot-version=v1.0 ATGGAGCCTAAGCCCAGCTTCTTCAGGAACGTTCTAGCGCGGGTGCTCATCTTCGGCGTCCTGATAATCGTCGTCCGCTTCGTCTACGTCGTCACAATCG CCGGCGAGTCCTGCACCGTCGGCGACTTCTGCTTCTTCTCCCTCCCGCAGAATTTCATCTCCGTCGCCGGCGGCGGAGCCGCCGCCGCCGTCCGGATGAA CGACGGCGGTCTGTACACCAGCAAGGACTGGATCAATTCCGTCCAGTTCTACTCCTCCGTCTTCCAGAATTTGATCTCCGACGGTTACCTCTCTACGAGT TCGAAATCCCTCTGCGTGGAGACGCCGTTGGGCCAGGAGGTGTTCGCCCTGAAGGAGATCGGAGTTTCCGAATCGATCGGGTTGTTTAAGAAGGCGTCGA AGCCGCTGGTGATCTCCAGCAAATTGAAGAAGAGGATTCCGTTCGACGATGACACCTTTGACTTTATCTTCTCCGGCGGAGGCCGATTCGACACAGTGCT TCAGCCGCTTGATTTGGCATCGGAGATTGTTCGGACGCTGAAACCCGAAGGGTTTCTTGTGGTCCACGTCAGTGCGAAAGATACGTATAGCTTCGATTCT TTCCTTGGTTTATTCAATTCCTGTAAATTGGTTAGGTCTCGTGGGCTCGACGGATATGATTCTTCTTCTTCAACTAGAGAGATTATTCTGCAAAAACACG GGCAGATTATTACTCAAACTTCTCAGATTCTTCGTTCAGGAAATAGACAGTGTTTGGTTCCAGCGCACAAGCTGGATTTGGTTCGTGATGCTGAGCCTTT GATTGAACAGGAGCCATTGAAGCCATGGCTTACTCTGAAGAGAAATGTGAAGAACATTAAGTATTTACCTTCCATGGCTGATATAAGCTTTAAGAACAGA TATGTGTACGTTGATGTTGGAGCAAGAAGCTACGGCTCTAGTATAGGGAGCTGGTTTAAGAAACAGTACCCTAAGCAGAACAAGACGTTTGATGTGTATG CAATCGAGGCTGATAAAACGTTCCACGAAGAGTATAAGACTAAATCGAAGAAAGGCGTCACATTGCTTCCTTTTGCTGCTTGGGTGAAGAACGAGACTTT GTCGTTCGAAATCCATAGAGATCCTGGTGAGGATGCCTCGGCGAAAGGAAGAGGAATGGGGAGAATTCAGCCGGTTAATCCCTCAGCTGGTGGATTCGAG GGGGTGGTGGATGAGATTGAAGGGTTTGATTTTGCACAGTGGTTGAAGAGGACAGTGACGGAGAAGGATTTCGTGGTTATGAAGATGGACGTAGAAGGGA CCGAGTTCGATCTGATACCGAGGTTGTTCGAAACTGGAGCGATTTGTTTGATTGATGAACTCTTTCTTGAATGCCATTACAATAGGTGGCAGAGATGTTG CCCTGGACAGAGAAGCCCCAAATACGAGAAAACTTACGAGCAGTGCTTGGATTTGTTCTCGTCCCTCAGAGAAAGCGGAGTCCTTGTTCATCAATGGTTT TGA
AA sequence Show only first row Show all	>Lus10022682 pacid=23178636 polypeptide=Lus10022682 locus=Lus10022682.g ID=Lus10022682.BGIv1.0 annot-version=v1.0 MEPKPSFFRNVLARVLIFGVLIIVVRFVYVVTIAGESCTVGDFCFFSLPQNFISVAGGGAAAAVRMNDGGLYTSKDWINSVQFYSSVFQNLISDGYLSTS SKSLCVETPLGQEVFALKEIGVSESIGLFKKASKPLVISSKLKKRIPFDDDTFDFIFSGGGRFDTVLQPLDLASEIVRTLKPEGFLVVHVSAKDTYSFDS FLGLFNSCKLVRSRGLDGYDSSSSTREIILQKHGQIITQTSQILRSGNRQCLVPAHKLDLVRDAEPLIEQEPLKPWLTLKRNVKNIKYLPSMADISFKNR YVYVDVGARSYGSSIGSWFKKQYPKQNKTFDVYAIEADKTFHEEYKTKSKKGVTLLPFAAWVKNETLSFEIHRDPGEDASAKGRGMGRIQPVNPSAGGFE GVVDEIEGFDFAQWLKRTVTEKDFVVMKMDVEGTEFDLIPRLFETGAICLIDELFLECHYNRWQRCCPGQRSPKYEKTYEQCLDLFSSLRESGVLVHQWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01710			methyltransferases (.1)		Lus10022682 [exp]	0	1
AT1G51200			A20/AN1-like zinc finger famil...		Lus10004889 [exp]	1.0	0.9150
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	3.7	0.9109
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	4.0	0.9091
AT3G03280			unknown protein		Lus10013490 [exp]	8.7	0.9099
AT2G01300			unknown protein		Lus10009104 [exp]	9.5	0.8748
AT3G57450			unknown protein		Lus10031071 [exp]	10.7	0.8863
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	11.5	0.8509
AT2G25250			unknown protein		Lus10041025 [exp]	13.7	0.8748
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	14.1	0.8932
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	16.2	0.8718

Compare expression of checked genes

Lus10022682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.