Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01700 352 / 1e-118 Protein phosphatase 2C family protein (.1.2) AT5G36250 342 / 1e-113 Protein phosphatase 2C family protein (.1) AT3G02750 328 / 7e-108 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 324 / 5e-106 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 323 / 7e-106 Protein phosphatase 2C family protein (.1) AT1G03590 322 / 1e-105 Protein phosphatase 2C family protein (.1) AT4G03415 319 / 1e-104 Protein phosphatase 2C family protein (.1.2) AT5G27930 285 / 1e-92 Protein phosphatase 2C family protein (.1.2) AT3G16800 284 / 1e-92 Protein phosphatase 2C family protein (.1.2.3) AT3G05640 273 / 5e-88 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014231 [exp] 826 / 0 AT5G01700 360 / 1e-120 Protein phosphatase 2C family protein (.1.2) Lus10001268 [exp] 682 / 0 AT5G01700 365 / 8e-124 Protein phosphatase 2C family protein (.1.2) Lus10012218 [exp] 663 / 0 AT5G36250 353 / 3e-118 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 332 / 1e-109 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 332 / 3e-109 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10000402 [exp] 327 / 4e-107 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10031631 [exp] 325 / 4e-107 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 325 / 5e-107 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 322 / 3e-106 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105000 [exp] 558 / 0 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 539 / 0 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 353 / 1e-117 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 339 / 3e-112 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 335 / 7e-111 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 334 / 2e-110 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G066200 [exp] 328 / 1e-107 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 325 / 2e-106 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.018G059800 [exp] 310 / 8e-103 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.010G006200 [exp] 299 / 4e-98 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10022683 pacid=23178626 polypeptide=Lus10022683 locus=Lus10022683.g ID=Lus10022683.BGIv1.0 annot-version=v1.0 ATGGGAGCCTGTTGCAGCACCGAGATCCATTTCGGCTCCAATGCTGCAGACAACGATGCTACGGATCGTAAGGACTATGAGGTCGACAGCGACGAAGAAG ATGACAACGTCATCGTCGGAGATTACGGTGTCCGAATCCGCCTCCATGGCGCCTCCAAATTCATCTCCATGTTCACCCAACAGGGCAAGAAAGGCGTCAA TCAAGACGCCATGACCGTTTGGGAGGAATTCGCAGGGGACAAAGGGATGACATTTTGCGGGGTGTTTGATGGCCATGGGCCTTACGGTCACAAGGTTGCG CGCCACGTTCGAGACAATTTAGCATCGAAGCTCTCAAGCGGGATCAAATTGTCACAGCTTAATGGTAGATTGGATTGCGGTGACGTAGATAGTGATCACG AGTCCATTAAACCGAATGATGCTAACAGTTCGTTGATCTTGTCGTCGTGGGAAACACTTTCTACAAAATGCTTCAAGGAAATGGACGAGGAACTCAGCCT CGACGCCAGCATTGACAGCTACTGCAGCGGCGCCACTGCTGTCTCCGTAATCAAGAAGGGTAGGCATTTGTTGATAGCGAACTTGGGCGATTCTCGAGCG GTTCTTTGCCGAAAAGGCAATAACAACCAGTTGATTCCGGTCCAACTCACCGTCGATTTGAAACCCAATGTCCCAAGCGAAGCGGAAAGGATCAAGGAGA AAAACGGGAGAGTGTTTGCAATGGAGGAAGAACCTCATATTTTCAGAGTATGGATGCCAGATGAAGACTGCCCCGGTCTAGCAATGGCGAGAGCATTCGG AGATTTCTGCCTCAAGGATTGCGGCCTCATTTCCACTCCTCAAGTTTCGTACAGAACGCTCACAAATGATGACGAATTCATTGTTCTAGCCACCGACGGA ATATGGGACGTGCTAACGAACGCCGAGGTGGTGAACATAGTGGCATCAGCAAGGAAGCGATCGATGGCGGCCAATTTACTAGTTAAATACGCGGTCCGGC TATGGAGAACCAGACACCCGGGCTGCAGGATCGACGACTGCACGGTCGTGTGCCTGTTTTTGAAGAACAAAACAACCCTGACCAGGTCATTCTCCGAAGT AAGCCGAGTGAGCGCCAACCACACCGAGCTAGCGGACAACTTCTCGGAAGTGAGCAGGGCCAGCGTCCACCATTCGGAGATCGCAGCCGTGCCTTTGAAG TCCAGACCCAGGCGTCCGCCTGCTGGCCCCGACGCTAAAACCAACAACGGCTCAGGTGGGCCGGCGGTGAGCAGAGTGGACACGTTTGACGTGGGTTCCT CGTCGGCTTTTTCCCCTGGGAATGTGTTGAGTCGGAGGAGATCGTTGAAGTCTCCAACAGTAGAACAACCTGTTGAGGTCTAA
AA sequence Show only first row Show all	>Lus10022683 pacid=23178626 polypeptide=Lus10022683 locus=Lus10022683.g ID=Lus10022683.BGIv1.0 annot-version=v1.0 MGACCSTEIHFGSNAADNDATDRKDYEVDSDEEDDNVIVGDYGVRIRLHGASKFISMFTQQGKKGVNQDAMTVWEEFAGDKGMTFCGVFDGHGPYGHKVA RHVRDNLASKLSSGIKLSQLNGRLDCGDVDSDHESIKPNDANSSLILSSWETLSTKCFKEMDEELSLDASIDSYCSGATAVSVIKKGRHLLIANLGDSRA VLCRKGNNNQLIPVQLTVDLKPNVPSEAERIKEKNGRVFAMEEEPHIFRVWMPDEDCPGLAMARAFGDFCLKDCGLISTPQVSYRTLTNDDEFIVLATDG IWDVLTNAEVVNIVASARKRSMAANLLVKYAVRLWRTRHPGCRIDDCTVVCLFLKNKTTLTRSFSEVSRVSANHTELADNFSEVSRASVHHSEIAAVPLK SRPRRPPAGPDAKTNNGSGGPAVSRVDTFDVGSSSAFSPGNVLSRRRSLKSPTVEQPVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	0	1
					Lus10039759 [exp]	4.0	0.9422
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	4.0	0.9533
					Lus10040066 [exp]	5.1	0.9345
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	7.2	0.9521
					Lus10015828 [exp]	9.2	0.9491
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	9.6	0.8990
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	9.7	0.9441
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	10.8	0.9487
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	13.9	0.8727
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10009060 [exp]	14.3	0.8891

Compare expression of checked genes

Lus10022683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.