Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33110 517 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 495 / 2e-176 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23530 77 / 3e-15 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23510 75 / 2e-14 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 74 / 2e-14 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23470 69 / 2e-12 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G18000 62 / 3e-10 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 61 / 9e-10 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G73600 60 / 1e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 49 / 2e-06 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014230 [exp] 670 / 0 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023741 [exp] 98 / 6e-22 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10011784 [exp] 93 / 3e-20 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10009056 [exp] 59 / 3e-09 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10031348 [exp] 58 / 5e-09 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 57 / 1e-08 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 55 / 4e-08 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009537 [exp] 47 / 1e-05 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 47 / 1e-05 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G060000 [exp] 565 / 0 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G067800 [exp] 89 / 5e-19 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 84 / 1e-17 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 82 / 1e-16 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 81 / 1e-16 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G170300 [exp] 80 / 7e-16 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 77 / 7e-15 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.012G047400 [exp] 60 / 1e-09 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 59 / 2e-09 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G263700 [exp] 52 / 2e-07 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02353 [flax] [poplar] CMAS Mycolic acid cyclopropane synthetase
Representative CDS sequence Show only first row Show all	>Lus10022684 pacid=23178516 polypeptide=Lus10022684 locus=Lus10022684.g ID=Lus10022684.BGIv1.0 annot-version=v1.0 ATGGAGAGCTTAATCCAGATTCCTTACAACGCCTCAGTGAAGTTCATTTTGGGTTCTATGGAGCGGAATCTGCTGCCGGATGTCGTAATACGGAAGCTCA CTCGTTTGATGTTGGGAGTTCGTCTTCGATGGGGTTACAAGGCTTCTGCTGAGCTCCAGCTCTCTGATCTCCTCAGCTTCGTACATTCTCTTAAGGATTT GCCCATTGCTATACAGACGGAGAAGCCGAAAGAACAACACTATGAAGTTCTCACTGCCTTTTTCAAGCTTGTTCTTGGCAAGAATCTCAAATACAGTTGT TGCTATTTCCCCGATAAGAAAAGTAGCCTGGAGGAAGCAGAGGATGCAATGCTGGAATTATACTGCGAGAGATCGGAGCTGAAAGACGGACAGAGTGTTC TTGATGTCGGTTGTGGATGGGGGTCACTGGTTCTCTACATAGCACACAAGTATAGTGACTGTAAGGTTACCGGGATTTGCAATTCCACTACCCAGAAAGC ATTCATTGAGGAGCAATGCCGGGACCGTAAATTGCAGAATGTCGACATCATCGTTGCTGACATCAGCACGTTCGAAATGGACTATGCTTCGTTTGACCGG ATTTTTTCGATCGAGATGTTCGAGCATATGAAGAACTATAGAGAGCTTCTTAAGAAGATATCAAAGTGGATGAACCAAGATGGCCGTCTCTTTGTCGATC ATTTCTGCCATAAGGTGTTCCCTTATCATTTTGAGGTAATCATTGCTTGCTTCAAGTACTTCCGTCTTTTTACCCTCAGCAAGTTCATCACTGTCGTACA TGTTCATCAGGATAAATATGAGGAGGATTGGCTGGCTAGGTACTTCTTCAGTGGAGGCACAATGCCTTCCGCAAATCTCCTGCTCTATTTCCAGGATGAC GTGTCAGTGGTCAACCAATGGAATGTGAATGGGAATCATTATGCACAAACAAGCGAGGAGTGGCTGAAAAGAATGGACAAGAACATGAACATCATCAAAC CAATAATGGCGGCCACCTATGGCAAGGATCAGGCTGTGAAATGGACAGTCTATTGGCGGACATTCTTCATGGGAGTTGCTGAACTCTTCAGATATAACAA TGGCGAAGAATGGCTGGTCACTCATTACCTTTTCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10022684 pacid=23178516 polypeptide=Lus10022684 locus=Lus10022684.g ID=Lus10022684.BGIv1.0 annot-version=v1.0 MESLIQIPYNASVKFILGSMERNLLPDVVIRKLTRLMLGVRLRWGYKASAELQLSDLLSFVHSLKDLPIAIQTEKPKEQHYEVLTAFFKLVLGKNLKYSC CYFPDKKSSLEEAEDAMLELYCERSELKDGQSVLDVGCGWGSLVLYIAHKYSDCKVTGICNSTTQKAFIEEQCRDRKLQNVDIIVADISTFEMDYASFDR IFSIEMFEHMKNYRELLKKISKWMNQDGRLFVDHFCHKVFPYHFEVIIACFKYFRLFTLSKFITVVHVHQDKYEEDWLARYFFSGGTMPSANLLLYFQDD VSVVNQWNVNGNHYAQTSEEWLKRMDKNMNIIKPIMAATYGKDQAVKWTVYWRTFFMGVAELFRYNNGEEWLVTHYLFKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33110			S-adenosyl-L-methionine-depend...		Lus10022684 [exp]	0	1
AT3G47710	bHLH	BNQ3, PRE4, bHL...	BASIC HELIX-LOOP-HELIX PROTEIN...		Lus10024241 [exp]	6.6	0.9426
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10033617 [exp]	7.3	0.9203
AT5G54370			Late embryogenesis abundant (L...		Lus10020169 [exp]	8.8	0.9360
AT3G49650			P-loop containing nucleoside t...		Lus10019245 [exp]	11.8	0.9322
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	15.2	0.9347
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	15.6	0.9160
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	15.7	0.9189
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	18.5	0.9186
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	21.0	0.9268
AT1G06980			unknown protein		Lus10042244 [exp]	22.2	0.9186

Compare expression of checked genes

Lus10022684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.