Plant FIBer expression Database

Lus10022687 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36145 178 / 5e-57 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014224
[exp]
313 / 3e-110 AT2G36145 181 / 3e-58 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G210000
[exp]
204 / 4e-67 AT2G36145 178 / 6e-57 unknown protein
PFAM info
Representative CDS sequence
>Lus10022687 pacid=23178576 polypeptide=Lus10022687 locus=Lus10022687.g ID=Lus10022687.BGIv1.0 annot-version=v1.0
ATGGCTTCTTTAGCTCTCAAGCAACTGATCTACTCCACTCCCACTTCCAAATTGTATCCTTCTCCTCCTCTTCCTCTGCGACCTTACTACTCACCGTTAG
CCACCGCCTCCGTTCAACACCGGCGGCATTTTGGTATCCGCATCCTCCACAACTTCACACCAGTACTAGTCCCCAAATCCTCCTCTGGCAACGGCGGCAT
TGTAGCTTCCGATGATGACCCTGAAGACGGAGTCTTGTTGGGTACCCTGAAACTCCCCGGAAACACCGATCTCACCCGATTCGAAACCTTGATGTTCCAG
TGGGGGAACAGTCTTTCTCAGGGCTCTAATCTGCCATTCCCAGTTCCACTCAAGGTTGACAAAGTAGCAAGAGGAGCGAGGTTGGGGTTCATCACCGTCG
ACGGCGGGGAGACGGAAGTTCCGGTGTACATAGACTGCTTGGTTTTCCCGGCAACCGGGTCTGACGGTCCGATCTTCAGAGCGATCAGGAACGGACGGCG
GAAGGGTGAAGCTGCGCCTGGAGAGGCCAGAATCATGCGAAGCCTCCTCGATGCGCTTCAGAAATCCGTCCAAATTGCTCGCCTCTAG
AA sequence
>Lus10022687 pacid=23178576 polypeptide=Lus10022687 locus=Lus10022687.g ID=Lus10022687.BGIv1.0 annot-version=v1.0
MASLALKQLIYSTPTSKLYPSPPLPLRPYYSPLATASVQHRRHFGIRILHNFTPVLVPKSSSGNGGIVASDDDPEDGVLLGTLKLPGNTDLTRFETLMFQ
WGNSLSQGSNLPFPVPLKVDKVARGARLGFITVDGGETEVPVYIDCLVFPATGSDGPIFRAIRNGRRKGEAAPGEARIMRSLLDALQKSVQIARL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36145 unknown protein Lus10022687
[exp]
0 1
AT1G15980 PnsB1, NDH48, N... Photosynthetic NDH subcomplex... Lus10026086
[exp]
1.0 0.9588
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Lus10029979
[exp]
2.8 0.9527
AT1G54500 Rubredoxin-like superfamily pr... Lus10015945
[exp]
3.0 0.9523
AT1G76080 ATCDSP32, CDSP3... ARABIDOPSIS THALIANA CHLOROPLA... Lus10017245
[exp]
3.2 0.9467
AT3G18890 AtTic62 translocon at the inner envelo... Lus10042346
[exp]
4.0 0.9502
AT2G01755 unknown protein Lus10005230
[exp]
5.9 0.9410
AT4G02530 chloroplast thylakoid lumen pr... Lus10030109
[exp]
6.5 0.9430
AT3G26710 CCB1 cofactor assembly of complex C... Lus10031981
[exp]
7.9 0.9387
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Lus10000221
[exp]
8.9 0.9371
AT4G17560 Ribosomal protein L19 family p... Lus10014467
[exp]
9.2 0.9340

Lus10022687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.