Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06130 362 / 6e-126 chaperone protein dnaJ-related (.1.2) AT5G61670 335 / 3e-115 unknown protein AT2G34860 44 / 3e-05 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016993 [exp] 430 / 1e-152 AT5G06130 404 / 4e-142 chaperone protein dnaJ-related (.1.2) Lus10014223 [exp] 376 / 3e-133 AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2) Lus10021316 [exp] 349 / 3e-121 AT5G06130 348 / 3e-122 chaperone protein dnaJ-related (.1.2) Lus10016713 [exp] 324 / 6e-111 AT5G61670 447 / 2e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210500 [exp] 419 / 4e-148 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2) Potri.012G114200 [exp] 338 / 1e-116 AT5G61670 380 / 3e-133 unknown protein Potri.001G009800 [exp] 46 / 9e-06 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022688 pacid=23178605 polypeptide=Lus10022688 locus=Lus10022688.g ID=Lus10022688.BGIv1.0 annot-version=v1.0 ATGGCGATGGCGGCTTCCTCTCTCCGTTCTTCTCCTCCTCGGCTTCCTCTAAACTCCTCCTTTCCGTCACACCGGAATTCTGCCGCCTTCCTTCTTCCTC TCCCCAGCCGGCTCCGCTCACCGATCGTCCGATGTTCCTCTCCGATCGACTCATCCTCCGACACCGTCCCCGCTGGGGAAAGCAACTGGAGTAACTTCTG CATCATAGAAGGACCGGAGACGGTTCAGGATTTCGTCCAAATGCAGGCGCAGGACGTTGAGGAGAACATCAAGAGAAGGCGCAACAAGATCTTCCTTCTA ATGGAGGAGCTGCGGAGATTGCGGATACAGCAAAGGATAAGGAGCGGGAGAAGGAGTATCAACGGAGAAGAAGAACAAGACGAGATGCCTGAAATCCAAT CCACAATCCCTTTCATTCCTCATCTGACGCCAAAGACGCTGAAGCAGCTGTACCTCACAAGCTTCTCATTCGTATCAGGGATTATCGTCTTCGGAGGCCT TATTGCTCCTATTCTGGAAGTGAAACTAGGTATCGGTGGAACTTCGTACGAGGATTTCATAAGGAGCTTGCATTTGCCAATGCAGCTAAGCCAGGTTGAT CCTATAGTTGCATCCTTTTCGGGTGGGGCAGTAGGCGTCATTTCAGCATTGATGTTGATTGAAGCGAACAATGTTGAGCAACAAGAGAAGAAGAGATGTA GATACTGCCATGGAACTGGATATTTGGCGTGTGCTCGCTGTGGTGGTGGTGGTGTGTGCTTGGATGTTAATCCCATCTCGATATCCAGTGCTTCGGACAA GCCACTGCGTGTTCCATCAACACAAAGGTGTCCTAACTGCTCGAGTGCAGGAAAGGTGATGTGCCCTACATGTCTCTGCACCGGAATGGTGATGGCGAGC GAACACGATCCTCGAATTGATCCATTCGATTAA
AA sequence Show only first row Show all	>Lus10022688 pacid=23178605 polypeptide=Lus10022688 locus=Lus10022688.g ID=Lus10022688.BGIv1.0 annot-version=v1.0 MAMAASSLRSSPPRLPLNSSFPSHRNSAAFLLPLPSRLRSPIVRCSSPIDSSSDTVPAGESNWSNFCIIEGPETVQDFVQMQAQDVEENIKRRRNKIFLL MEELRRLRIQQRIRSGRRSINGEEEQDEMPEIQSTIPFIPHLTPKTLKQLYLTSFSFVSGIIVFGGLIAPILEVKLGIGGTSYEDFIRSLHLPMQLSQVD PIVASFSGGAVGVISALMLIEANNVEQQEKKRCRYCHGTGYLACARCGGGGVCLDVNPISISSASDKPLRVPSTQRCPNCSSAGKVMCPTCLCTGMVMAS EHDPRIDPFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	0	1
AT5G06130			chaperone protein dnaJ-related...		Lus10014223 [exp]	1.7	0.8703
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	4.5	0.8127
AT1G51720			Amino acid dehydrogenase famil...		Lus10006872 [exp]	4.6	0.8593
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	5.1	0.8633
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	6.3	0.8469
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	7.0	0.8378
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	8.9	0.8154
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	9.4	0.8284
AT2G25605			unknown protein		Lus10008087 [exp]	12.1	0.8096
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	14.1	0.7950

Compare expression of checked genes

Lus10022688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.