Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52570 182 / 3e-57 alpha/beta-Hydrolases superfamily protein (.1) AT4G10030 82 / 2e-18 alpha/beta-Hydrolases superfamily protein (.1) AT4G10050 44 / 2e-05 esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016992 [exp] 253 / 6e-83 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10021315 [exp] 218 / 2e-69 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) Lus10014222 [exp] 159 / 2e-51 AT3G52570 130 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1) Lus10041047 [exp] 73 / 3e-15 AT4G10030 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077066 [exp] 213 / 2e-71 AT3G52570 173 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G076601 [exp] 132 / 2e-40 AT3G52570 181 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G076550 [exp] 134 / 2e-39 AT3G52570 327 / 9e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G074600 [exp] 80 / 6e-18 AT4G10030 485 / 5e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G099900 [exp] 43 / 5e-05 AT4G10050 549 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.019G072900 [exp] 42 / 7e-05 AT4G10050 555 / 0.0 esterase/lipase/thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10022689 pacid=23178512 polypeptide=Lus10022689 locus=Lus10022689.g ID=Lus10022689.BGIv1.0 annot-version=v1.0 ATGGCGCTCCACCGGAACAAACTCGCCGGTCCGAGACTATTCCTGACTCATTTCCTCGGCTCGTCAAGCCAAACATTCCGGCACACGAACCCTCGAACGC TCCAGACCATCGCTTTCGAAGAGATCCGATCATCCTCTTCCGTCGACAATCCAAACACTTCGACGGCCTTCATTCTCCACGGCCTTTTAGGATCTGGACG CAACTGGCGTTCCTTCTCCCGCAAGCTCGCTTCCTTCCTCTCCAATTCCTCTCCTCCTTCCGAGTGGAGGATGGTGCTTGTGGATCTCAGGAACCACGGT AATTCTGCGAAGATAGAAGGTCTCGAGCCGCCTCACGACATGTCCAGTGCGGCGAATGATTTGGCGAATTTGGTTAAAGCTCGAGGTTGGAATTGGCCTG ATGTTGTTATGGGCCACTCAATGGGAGGTAAAGTGGCGCTGCAATTCGCGGAGAGCTGCGCTCGTGGTGACTATGGCGATTCTGCGGCATTGCCAAAGCA GCTGATTCTGAGTGATTTCACTTGA
AA sequence Show only first row Show all	>Lus10022689 pacid=23178512 polypeptide=Lus10022689 locus=Lus10022689.g ID=Lus10022689.BGIv1.0 annot-version=v1.0 MALHRNKLAGPRLFLTHFLGSSSQTFRHTNPRTLQTIAFEEIRSSSSVDNPNTSTAFILHGLLGSGRNWRSFSRKLASFLSNSSPPSEWRMVLVDLRNHG NSAKIEGLEPPHDMSSAANDLANLVKARGWNWPDVVMGHSMGGKVALQFAESCARGDYGDSAALPKQLILSDFT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022689 [exp]	0	1
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	5.7	0.7934
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	9.0	0.7978
AT5G67620			unknown protein		Lus10011549 [exp]	15.9	0.7418
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	21.7	0.7775
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	22.0	0.7864
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	25.1	0.7896
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	25.7	0.7742
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	29.2	0.6912
AT5G38880			unknown protein		Lus10035250 [exp]	44.7	0.6607
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	45.7	0.7553

Compare expression of checked genes

Lus10022689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.