Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46510 54 / 2e-08 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 52 / 8e-08 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014221 [exp] 276 / 2e-94 AT2G28830 75 / 4e-15 PLANT U-BOX 12 (.1) Lus10040834 [exp] 45 / 2e-05 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 44 / 3e-05 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10038699 [exp] 43 / 8e-05 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10037970 [exp] 42 / 0.0001 AT3G54850 803 / 0.0 plant U-box 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251000 [exp] 161 / 5e-49 AT2G23140 63 / 1e-10 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.009G029600 [exp] 48 / 2e-06 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 47 / 3e-06 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.006G015100 [exp] 40 / 0.0007 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022690 pacid=23178583 polypeptide=Lus10022690 locus=Lus10022690.g ID=Lus10022690.BGIv1.0 annot-version=v1.0 ATGCTCTCTCATTTGCAGCTTGGCAATGCTAGACAAGAACAAAGCCAAGTTTGGAGTAGCCGGGACAGTCCAGGTTCTGGTCAAGACCATTTCATCGGGT CACCGAGCAGGTCAAGCAACCCACCATCCCTTAGTTGCTTGGCGGAGCTGATGCAGTTTCATGGCAATTGCACGTTGGCTGTTCGTGCCGGTGCAGTAAA GGCGCTGGTGGGAATAGTTGGTCAGAGATCAGATGGGGAAGAAGATATTGCAGGGAAGTCACTGGCGATTTTGAGTCTGCTAGCTAGGTTCGATGAAGGG TTGAGTGTACTGATTAATACTAAGGATGTGGTGAGATTCCTGATGGAGGGTTTGAAGATTAGGTGCATGACGAGCAAGGAAAGTTCAGCAGATATTCTAC TGAGGGTAATGGATGAAAGCGAGGAGTGTCTGAGGGATGCAACTCAGCTCCCTGATGAGTTGTTAACTCTGTTAGCGGACATTTCTGTCACAGGATCGTC CAAAGCCAGGGACAAAGCTGCTCAGCTCATGAAGAAGATGACAGAAGAAGCTAACTTGGACACCTCCGTCATTTTGTCATGA
AA sequence Show only first row Show all	>Lus10022690 pacid=23178583 polypeptide=Lus10022690 locus=Lus10022690.g ID=Lus10022690.BGIv1.0 annot-version=v1.0 MLSHLQLGNARQEQSQVWSSRDSPGSGQDHFIGSPSRSSNPPSLSCLAELMQFHGNCTLAVRAGAVKALVGIVGQRSDGEEDIAGKSLAILSLLARFDEG LSVLINTKDVVRFLMEGLKIRCMTSKESSADILLRVMDESEECLRDATQLPDELLTLLADISVTGSSKARDKAAQLMKKMTEEANLDTSVILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10022690 [exp]	0	1
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	14.2	0.7712
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Lus10036024 [exp]	24.9	0.7174
AT3G27210			unknown protein		Lus10035217 [exp]	28.6	0.7322
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10008202 [exp]	40.8	0.7070
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	41.2	0.7260
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	49.5	0.6264
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	52.3	0.6998
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	53.5	0.6996
AT1G70780			unknown protein		Lus10031920 [exp]	62.4	0.6980
					Lus10031413 [exp]	77.0	0.6429

Compare expression of checked genes

Lus10022690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.