Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52570 224 / 4e-73 alpha/beta-Hydrolases superfamily protein (.1) AT4G10030 103 / 4e-26 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014220 [exp] 302 / 2e-103 AT3G11510 236 / 4e-78 Ribosomal protein S11 family protein (.1) Lus10016992 [exp] 289 / 2e-96 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10021315 [exp] 283 / 6e-94 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) Lus10041047 [exp] 100 / 4e-25 AT4G10030 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10006176 [exp] 57 / 3e-09 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076550 [exp] 216 / 3e-71 AT3G52570 327 / 9e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G074600 [exp] 96 / 2e-23 AT4G10030 485 / 5e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G076601 [exp] 57 / 8e-11 AT3G52570 181 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022691 pacid=23178525 polypeptide=Lus10022691 locus=Lus10022691.g ID=Lus10022691.BGIv1.0 annot-version=v1.0 ATGGTGGATGGTTTCCATGTCGGCCATGTGATACTTGAGTTCGGGATTGAGGGAGAGGTTAAAGAGGACAGAGATCGAATCATGGAAACTGGGGATTTCA TCAGGGTCACAAGGTTAGAACAGCTCTGGGTGCTGGATTCTGTCCCTGGAGAGGTGAGCACAGACAACAGTGACGGAGAAGTAGAGCAAGTCTTGAAGAC TTTACAGAGCTTCCCGCCATTAATTCCGTCACGAAGCTGGCTAGTAAACCACCTGCTCGAGCTCGGATTCTCGAAGTCCTTGTCAGAATGGATAGGCACC AGCTTAAGGAAATCTGGTGAAATGGAGACATGGGCTTTCAATCTTGATGGACTTGTTGAAATGTTCAATTCTTACAGGGACACTTCATACTGGTCTCTCT TGGAACATCCTCCCAAAGGAATGGATATTGGACTTGTAGTTGCAGAGAACAGTGACCTTTGGGAACCGAATGTGATCGAACTACTGGAAAGCCTTGCCGG AAGGGGAAGAGGTGAACCATCGGAAGGATCATTCTCGCTTCATGCTCTTCCGAACTCGGGGCATTGGATTCATGTGGACAATCCAAAGGGACTGCTTGAA ATTCTGGCTCCTAGAATTGCTTCCATCTGA
AA sequence Show only first row Show all	>Lus10022691 pacid=23178525 polypeptide=Lus10022691 locus=Lus10022691.g ID=Lus10022691.BGIv1.0 annot-version=v1.0 MVDGFHVGHVILEFGIEGEVKEDRDRIMETGDFIRVTRLEQLWVLDSVPGEVSTDNSDGEVEQVLKTLQSFPPLIPSRSWLVNHLLELGFSKSLSEWIGT SLRKSGEMETWAFNLDGLVEMFNSYRDTSYWSLLEHPPKGMDIGLVVAENSDLWEPNVIELLESLAGRGRGEPSEGSFSLHALPNSGHWIHVDNPKGLLE ILAPRIASI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022691 [exp]	0	1
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Lus10015839 [exp]	5.2	0.7381
AT3G28760			unknown protein		Lus10005250 [exp]	11.1	0.7613
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	12.6	0.7604
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	21.4	0.7561
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	27.2	0.7407
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10043048 [exp]	27.9	0.7418
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	32.9	0.7375
AT3G25680			unknown protein		Lus10021714 [exp]	38.2	0.7296
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030660 [exp]	40.2	0.6801
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10037306 [exp]	40.8	0.7308

Compare expression of checked genes

Lus10022691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.