Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63270 403 / 9e-145 ABCI1, ATNAP10 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) AT1G67940 72 / 6e-15 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT3G62150 71 / 5e-14 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G27940 70 / 1e-13 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT4G25750 69 / 2e-13 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT1G28010 69 / 2e-13 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT5G06530 69 / 3e-13 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT5G19410 68 / 4e-13 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT5G52860 67 / 7e-13 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT1G02530 67 / 8e-13 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006727 [exp] 460 / 2e-167 AT1G63270 404 / 3e-145 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10040034 [exp] 89 / 4e-23 AT1G63270 79 / 3e-20 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10038050 [exp] 79 / 9e-17 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009989 [exp] 78 / 3e-16 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010012 [exp] 77 / 6e-16 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10035453 [exp] 74 / 1e-15 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10010067 [exp] 76 / 2e-15 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010074 [exp] 72 / 2e-14 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10029905 [exp] 71 / 8e-14 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G110200 [exp] 405 / 2e-145 AT1G63270 387 / 2e-138 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Potri.018G132000 [exp] 79 / 1e-17 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.002G187500 [exp] 74 / 8e-15 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 73 / 1e-14 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 72 / 2e-14 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.006G123900 [exp] 72 / 3e-14 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113200 [exp] 71 / 4e-14 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.016G093600 [exp] 71 / 5e-14 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.015G136700 [exp] 71 / 5e-14 AT4G25450 953 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Potri.014G113000 [exp] 69 / 4e-13 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10022692 pacid=23178684 polypeptide=Lus10022692 locus=Lus10022692.g ID=Lus10022692.BGIv1.0 annot-version=v1.0 ATGTCTCTTCGAAGACCTGCTTTGCCGAGAATGCTTCTAGACAACGTCTCATGCATGAGAAACGCACAACAAATCTTGCGGAATGTTAACGTCTCAATAC ACGACGGTGGAGCACTTGTTCTGACAGGAACAAACGGCTCAGGCAAAACAACACTCTTAAGGATGTTGGCCGGATTCACTAAGCCATCAGCCGGCCAAGT ACTCTGGAACGGACATGACATAACAGACTCTGGAGTATTCCAGCAATACAAGCTTCAGCTAAACTGGCTCTCTCTCAAAGACGCAATGAAAGACAGGTTC ACTGTCCTCGAAAACGTACAATGGTTCGAGGTCCTTGAGAGCAAGCAAGGGAAGTCGTTGCCTGCTCTTGAGCTGATGGGGCTTGGCAGGCTGGCCAACG AGAGGACGAGAATGCTGTCGATGGGTCAGCGGAAGAGGGTCCAACTCGCTAGATTGCTAGCAATGGATCGGCCTATTTGGTTGTTGGACGAGCCTTCTGT TGCGCTAGACGATGATGGGGTGAAGCTGCTTGAGTTCATAATCTCAGAGCACAGGAAGAAAGGCGGGATTGTGATAGTGGCGACCCATTTGCCAATCAAG ATTGAAGATGCAATGTACCTTAGGCTGCCACCCAGGTTCCCTAGAAGGATGACTCATATAGACATGCTTGATCGTAAAGACATCGAGGCATAA
AA sequence Show only first row Show all	>Lus10022692 pacid=23178684 polypeptide=Lus10022692 locus=Lus10022692.g ID=Lus10022692.BGIv1.0 annot-version=v1.0 MSLRRPALPRMLLDNVSCMRNAQQILRNVNVSIHDGGALVLTGTNGSGKTTLLRMLAGFTKPSAGQVLWNGHDITDSGVFQQYKLQLNWLSLKDAMKDRF TVLENVQWFEVLESKQGKSLPALELMGLGRLANERTRMLSMGQRKRVQLARLLAMDRPIWLLDEPSVALDDDGVKLLEFIISEHRKKGGIVIVATHLPIK IEDAMYLRLPPRFPRRMTHIDMLDRKDIEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	0	1
AT5G25500			unknown protein		Lus10002897 [exp]	3.2	0.9154
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10022881 [exp]	3.7	0.9156
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10031534 [exp]	9.6	0.8525
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Lus10012057 [exp]	11.0	0.9064
AT4G12060			Double Clp-N motif protein (.1...		Lus10007005 [exp]	12.5	0.8514
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Lus10041388 [exp]	13.0	0.8428
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10024576 [exp]	16.0	0.8921
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10038832 [exp]	16.0	0.8206
AT3G45770			Polyketide synthase, enoylredu...		Lus10020161 [exp]	16.4	0.8196
AT1G57540			unknown protein		Lus10035345 [exp]	16.5	0.8589

Compare expression of checked genes

Lus10022692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.