Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11510 232 / 5e-78 Ribosomal protein S11 family protein (.1) AT2G36160 228 / 1e-76 Ribosomal protein S11 family protein (.1) AT3G52580 228 / 2e-76 Ribosomal protein S11 family protein (.1) ATCG00750 52 / 1e-08 ATCG00750.1, RPS11 ribosomal protein S11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021315 [exp] 235 / 7e-75 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) Lus10016992 [exp] 234 / 2e-74 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10014220 [exp] 230 / 2e-74 AT3G11510 236 / 4e-78 Ribosomal protein S11 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218700 [exp] 236 / 6e-80 AT3G52580 241 / 4e-83 Ribosomal protein S11 family protein (.1) Potri.009G019400 [exp] 236 / 6e-80 AT3G52580 241 / 4e-83 Ribosomal protein S11 family protein (.1) Potri.011G080500 [exp] 234 / 9e-79 AT3G52580 238 / 4e-82 Ribosomal protein S11 family protein (.1) Potri.004G131800 [exp] 230 / 2e-77 AT3G52580 235 / 7e-81 Ribosomal protein S11 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00411 [flax] [poplar] Ribosomal_S11 Ribosomal protein S11
Representative CDS sequence Show only first row Show all	>Lus10022693 pacid=23178552 polypeptide=Lus10022693 locus=Lus10022693.g ID=Lus10022693.BGIv1.0 annot-version=v1.0 ATGTCCATTGCCAACATTTGCAAGAATAAGCAATGTTTTATTCTCCGCTGTGAGCTTTACACATCAATAGGCTTAGATACTAAGCGGCCCAAATCACTTC AGGGTTATCGCCGCACAACGCAGCTCGAAACACTTACAAAAACCCTATCTAACACCAAGCGAGAAGCTCTTCCGAGATCTCCAGCTAGCTCCCTCTCTTC CAGCCTCACTTCCTGCAAAGCTATGTCGAAGCGAAAGGTTAGGGAGCCCAAGGAGGAGACTGTTACCCTGGGGCCTAATGTTTCTGAAGGAACCATTGTC TTCGGTGTTGCTCACATCTTTGCATCATTTAATGACACCTTCATTCATGTCACTGATATTTCTGGCAGAGAAACTTTAGTTAGGATCACCGGTGGAATGA AGGTGAAAGCTGACAGGGATGAGTCCTCTCCCTACGCCGCTATGCTTGCAGCACAGGATGTTTCTACTCGATGCAAGGAGCTGGGTATCAATGCTCTTCA CATTAAGCTCCGAGCCACTGGTGGGAACAAGACCAAGACCCCTGGTCCTGGCGCTCAGTCAGCTCTCAGAGCTCTTGCTCGTTCTGGCATGAAGATCGGC CGCATTGAGGATGTGACCCCGATCCCAACTGACAGCACTCGCCGAAAGGGTGGAAGGAGAGGAAGGAGGCTGTGTGAGAATTGGGCCAGCACTCGCCGAA AGGGTGGAAGGAGAGGAAGGAGGCTGTGA
AA sequence Show only first row Show all	>Lus10022693 pacid=23178552 polypeptide=Lus10022693 locus=Lus10022693.g ID=Lus10022693.BGIv1.0 annot-version=v1.0 MSIANICKNKQCFILRCELYTSIGLDTKRPKSLQGYRRTTQLETLTKTLSNTKREALPRSPASSLSSSLTSCKAMSKRKVREPKEETVTLGPNVSEGTIV FGVAHIFASFNDTFIHVTDISGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIG RIEDVTPIPTDSTRRKGGRRGRRLCENWASTRRKGGRRGRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11510			Ribosomal protein S11 family p...		Lus10022693 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	2.6	0.9689
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	3.2	0.9653
AT5G24510			60S acidic ribosomal protein f...		Lus10028876 [exp]	3.7	0.9575
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	4.2	0.9577
AT4G18100			Ribosomal protein L32e (.1)		Lus10009591 [exp]	4.6	0.9614
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10020499 [exp]	4.7	0.9522
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10037964 [exp]	5.3	0.9394
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	5.3	0.9604
AT4G21105			cytochrome-c oxidases;electron...		Lus10006275 [exp]	6.2	0.9489
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031979 [exp]	8.7	0.9479

Compare expression of checked genes

Lus10022693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.