Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36200 367 / 5e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 82 / 3e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 77 / 9e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 49 / 1e-05 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022697 [exp] 799 / 0 AT2G36200 359 / 2e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 660 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 514 / 2e-173 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 506 / 2e-170 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 82 / 5e-16 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 81 / 7e-16 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 59 / 7e-09 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 55 / 1e-07 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 52 / 7e-07 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077800 [exp] 410 / 2e-133 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 409 / 3e-133 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 83 / 2e-16 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 78 / 5e-15 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 63 / 3e-10 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 50 / 4e-06 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022694 pacid=23178537 polypeptide=Lus10022694 locus=Lus10022694.g ID=Lus10022694.BGIv1.0 annot-version=v1.0 ATGACACCAATTTGGCTGTCTCTTGTAGAGGTTTATGCTGCTAGGGAAAAAAATGGTGTGTACATCCCGAAGGAACGATATTATCAGGAGGAATCTGAAA GAAAGGCTATGGCTGACCAAATAGAGCAAATGGGAGTCACAATAGAAACACATCAGAAGCAACTTGAAGAGTTGCAAGAGAAATATGATATTCAAGTTCG GCATTATGCCGACTTAAGCTGCAAACTTTCTGCCTCAGAGTATCTTGCTTCAGAGGGTGTTCAACTAGCTTCAGTTTTCGATGATCTGCGGGGAGCTCTC TCCACTCATCAAGGGGAAATGGCTATTTTCGCGAAGGAGCTACATCAGAGATTCAGTTCAAGCGGTGAGCAGACAAAGCAAATTTCAAACTATACAGATG AATTCTTTGGCAAATTGATGGACCAGTCCAAAACTATAAAAAATCATGTGACACGAGTTGACGACACACAAATAAGCAACATTGCTGATTTTCAAAGAGC ATACGAGGAACAAACCAAAGCCGATGCGTTGAAACTTGTTGCCAATATTAGCAATCTTGTTTCTCATCACATTGTCCGTCAGAAAGAGCTGGTTTGTACA ATGGTTGAGAAGTATTTACTACCGTTCATTTTATCGTTCATCTTCAGAATGGTGGTAATAAATGTTCCGCAGGTGAATGCAAGGCTTGATGGTTTCAGGG AGGCTGCAACTGAACGCAGGAAGTTTTTGGATGGTCAAGTTTCTTCTTTGGAGAATGTTACCACTGAAGCAAAACGAAAATGGCAGGAATTTTGCGTGCA AGTGGAGAGTGAAGCCAAGGATGGCGCGGACTATTCTACTGCGAAACATTGTCGAATGGAGATGCTCTTGCAGCAAAGTGTAAGCAACGCGGAATCAGCT TTCAAGCACTATAAAAAGACTAACGACTCGGTTAATGAAATGTGCACCAAACATGTCAAATCTGTGGCTTCGCTTGTCAGAGATTCATCTGACAGCATCG AGCAACACGTCTCTGAGATCGATTCTGCAAAAACTGCAGCCGAGCAAGATGTCGCAATGAACAACGAAGATGCACTTCGACATGTTGATGATACGTCAGC AAAAGAACGTGATTTGGTGTCAGGCATAGTGACAGCCGTGGAGGCGCTTATGAAGACCCTTGAGATTTTCCGGGAGGATCACAGTGAGCAAGCCACAGTC ATGAAGAACAAAACACAGGAAACTTTCCAGGAGAGCTTTATGGATTATGAGCCAACTGGTACTACTCCAACGAGGACTGAACCTGACATTTCGAGCAATG GGACAATCGAATCGTTAAGAGCAATGCCAATGGAAGCTTTGGTCGAGGAGTTTCGAGAGAACTCATACGAATCGTTTGAGGTGAAAAAAATTAATCCATC TCTGATACCACGGCCGCCCCTTATCCAAATCAATTAG
AA sequence Show only first row Show all	>Lus10022694 pacid=23178537 polypeptide=Lus10022694 locus=Lus10022694.g ID=Lus10022694.BGIv1.0 annot-version=v1.0 MTPIWLSLVEVYAAREKNGVYIPKERYYQEESERKAMADQIEQMGVTIETHQKQLEELQEKYDIQVRHYADLSCKLSASEYLASEGVQLASVFDDLRGAL STHQGEMAIFAKELHQRFSSSGEQTKQISNYTDEFFGKLMDQSKTIKNHVTRVDDTQISNIADFQRAYEEQTKADALKLVANISNLVSHHIVRQKELVCT MVEKYLLPFILSFIFRMVVINVPQVNARLDGFREAATERRKFLDGQVSSLENVTTEAKRKWQEFCVQVESEAKDGADYSTAKHCRMEMLLQQSVSNAESA FKHYKKTNDSVNEMCTKHVKSVASLVRDSSDSIEQHVSEIDSAKTAAEQDVAMNNEDALRHVDDTSAKERDLVSGIVTAVEALMKTLEIFREDHSEQATV MKNKTQETFQESFMDYEPTGTTPTRTEPDISSNGTIESLRAMPMEALVEEFRENSYESFEVKKINPSLIPRPPLIQIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36200			P-loop containing nucleoside t...		Lus10022694 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	6.9	0.7914
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	8.9	0.7940
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	11.4	0.8233
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	13.7	0.8054
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10007983 [exp]	13.7	0.7499
AT2G41705			camphor resistance CrcB family...		Lus10028071 [exp]	20.1	0.7407
AT5G14460			Pseudouridine synthase family ...		Lus10022284 [exp]	20.4	0.7686
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	21.3	0.7960
AT2G37960			unknown protein		Lus10027749 [exp]	25.3	0.7199
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	31.8	0.7457

Compare expression of checked genes

Lus10022694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.