Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13790 78 / 5e-17 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT3G52600 77 / 1e-16 ATCWINV2 cell wall invertase 2 (.1.2) AT1G55120 76 / 3e-16 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT2G36190 75 / 5e-16 ATCWINV4 cell wall invertase 4 (.1) AT3G13784 66 / 1e-12 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 58 / 4e-10 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G62660 40 / 0.0006 Glycosyl hydrolases family 32 protein (.1) AT1G12240 0 / 1 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014217 [exp] 149 / 2e-42 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10017015 [exp] 112 / 7e-29 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10021339 [exp] 110 / 2e-28 AT2G36190 691 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 78 / 5e-17 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 66 / 9e-13 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10001529 [exp] 62 / 1e-11 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 60 / 9e-11 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 58 / 5e-10 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015615 [exp] 56 / 1e-09 AT3G13790 264 / 2e-85 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210600 [exp] 99 / 2e-24 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 99 / 2e-24 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 92 / 8e-22 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 72 / 6e-15 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 62 / 1e-11 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.003G112600 [exp] 43 / 6e-05 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 40 / 0.0007 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022696 pacid=23178504 polypeptide=Lus10022696 locus=Lus10022696.g ID=Lus10022696.BGIv1.0 annot-version=v1.0 ATGAGAAGAACGATAAGTATATTCCAGACAAAGGTTCGATCGACAGCTAGACCGGACTCAGATATAACTACGGAAACTTCTACGCTTCGAAGTCCTTCTT CGATTACAAGAAGCAACGTAGTATCTTGTGGGGTTGGGCTAATGAGTCCGATAGTCCTACTCGTGACCAGCAAAAGGAATGGGTCGGTATCCAAGAATGG GTCGTTACGATACCTCACCAAAAGTAGAATAATGTTTACCTGCACTAACAACGACGATGTGCAGCTAATCCCGAGGACGGTGAGCCTAGACAAAAGCGGG AAGCAACTTCTACAGTGGCCAATTGAAAAGATTAACGAACTAAGAAGCTTCAAGCCAATTCGAATTGAGAACAAACCAATGAAGAAAGGGGAAAATATCA AAGTCAAACAAATATTATTAGCAGCCCAGGCTGACGTGGAGGTGACCTTCTCATTCAAAGACCTATCCAAAGTGGAACCCTTCGATCCCAAATGGGCCGA CCTTCCGGCCAAGATGTCTGTAAGGTCAAGGGCTCGACGGTGA
AA sequence Show only first row Show all	>Lus10022696 pacid=23178504 polypeptide=Lus10022696 locus=Lus10022696.g ID=Lus10022696.BGIv1.0 annot-version=v1.0 MRRTISIFQTKVRSTARPDSDITTETSTLRSPSSITRSNVVSCGVGLMSPIVLLVTSKRNGSVSKNGSLRYLTKSRIMFTCTNNDDVQLIPRTVSLDKSG KQLLQWPIEKINELRSFKPIRIENKPMKKGENIKVKQILLAAQADVEVTFSFKDLSKVEPFDPKWADLPAKMSVRSRARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10001034 [exp]	2.8	0.6625
					Lus10016844 [exp]	4.0	0.7560
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10015748 [exp]	7.7	0.6314
AT5G20810			SAUR-like auxin-responsive pro...		Lus10034888 [exp]	9.2	0.6580
AT1G16760			Protein kinase protein with ad...		Lus10033340 [exp]	12.0	0.6937
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	15.7	0.6513
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	18.2	0.6672
					Lus10031183 [exp]	30.7	0.6443
AT4G09990			Protein of unknown function (D...		Lus10007374 [exp]	32.9	0.5459
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	33.7	0.6436

Compare expression of checked genes

Lus10022696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.