Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36200 333 / 9e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 221 / 4e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 219 / 3e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 206 / 4e-56 ATP binding microtubule motor family protein (.1) AT2G22610 90 / 2e-18 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G55550 88 / 1e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27180 87 / 1e-17 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G54670 86 / 5e-17 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT1G18410 86 / 6e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 84 / 2e-16 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022694 [exp] 800 / 0 AT2G36200 394 / 3e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 601 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 469 / 3e-153 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 458 / 4e-149 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 210 / 3e-57 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 204 / 3e-55 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018120 [exp] 200 / 7e-54 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 199 / 2e-53 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 182 / 8e-48 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210700 [exp] 469 / 4e-153 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 372 / 3e-116 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 212 / 5e-58 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 211 / 9e-58 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 211 / 2e-57 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 189 / 3e-50 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G131900 [exp] 90 / 2e-18 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G140000 [exp] 88 / 9e-18 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G031200 [exp] 87 / 1e-17 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.005G030271 [exp] 85 / 6e-17 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10022697 pacid=23178595 polypeptide=Lus10022697 locus=Lus10022697.g ID=Lus10022697.BGIv1.0 annot-version=v1.0 ATGTCCGGCCGCCATGAGAAAGGAGTTAACGTCCAGGTCCTGCTTCGTTGCAGGCCGTTTAGCGACGATGAGTTGAGGTCCAATGCGCCCCAGGTAGTGA CTTGTAATGATTACCAGAGAGAAGTGGCGATTTCTCAGAATATCGCTGGGAAGCAAATCGACAGAGTTTTCACATTTGATAAGGTTTTTGGTCCGTCAGC TCAGCAACGAGACCTCTATGAACAAGCAGTGGTACCAATTGTACACGAGGTTTTGGAAGGGTTTAACTGTACAATTTTTGCATATGGTCAAACGGGTACT GGTAAAACTTATACAATGGAAGGAGAATGCAGGAGGGCAAAGAGTGGGATTAACGGGGAACTGCCTCAAGAAGCAGGGGTTATTCCTAGAGCTGTGAAGC AAATTTTTGACACACTTGAACGTCCTGTGAATAATAAACACTCTAAGGTTTATGCTGCTAGGGAAAAAAATGGTGTGTACATCCCGAAGGAACGATATTA TCAGGAGGAATCTGAAAGAAAGGCTATGGCTGACCAAATAGAGCAAATGGGAGTCACAATAGAAACACATCAGAAGCAACTTGAAGAGTTGCAAGAGAAA TATGATATTCAAGTTCGGCATTGTTCCGACTTAAGCTGCAAACTTTCTGCCTCAGAGAGAAACTTGCTTGAAACGAGTAAATTACTTTCCAATACCGAGG AAGAACTGAAAAAGTGCCGTTATGCATTGAATGAAAGGGATTTTGTCATATCTGAGCAAAATAAAGCTGGTAGAGAAGACAATCTGCAATCCAAAAACAG ATCATTAGTAAATAGTTTCCAGGCGGAGCTCTCCCAACAGATTGGTTCTCTTCGCAGCATCGTCGCAAATTCTATGTCTCAGCAGGATGAACATCTCCAG TGTGTTAGTAAACTGTGTCACTCCTTTCTGGCGACACATGACAAGAGATTCAGTTCAAGCGGTGAGCAGACAAAGCAAATTTCAAACTATACAGATGAAT TCTTTGGCAAATTGACGGACCAGTCCAAAACTATAAAAAATCATGTGACACGAGTTGACGACACACAAATGAGCAACATTGCTGATTTTCAAAGAGCATA CGAGGAACAAACCAAAGCCGATGCGTTGAAACTTGTTGCCAATATTAGCAATCTTGTTTCTCATCACATTGTCCGTCAGAAAGAGCTGGTTTGTACAATG GTTGAGAAGTATTTACTACAGTTCATTTTATCGTTCATCTTCAGAATGGTGGTAATAAATGTTCCGCAGGTGAATGCAAGGCTTGATGGTTTCAGGGAGG CTGCAACTGAACGCAGGAAGTTTTTGGATGGTCAAGTTTCTTCTTTGGAGAATGTTACCACTGAAGCAAAACGAAAATGGCAGGAATTTTGCGTGCAAGT GGAGAGTGAAGCCAAGGATGGCGCGGACTATTCTACTGCGAAACATTGTCGAATGGAGATGCTCTTGCAGCAAAGTGTAAGCAACGCGGAATCAGCTTTC AAGCACTATAAAAAGACTAACGACTCGGTTAATGAAATGTGCACCAAACATGTCAAATCTGTGGCTTCGCTTGTCAGAGATTCATCTGACAGCATCGAGC AACACGTCTCTGAGATCGATTCTGCAAAAACTGCAGCCGAGCAAGATGTCGCGATGAACAACGAAGATGCACTTCGACATGTTGCTGATATGTCAGCAAA AGAACGTGATTTGGTGTCAGGCATAGTGACAGCCGTGGAGGCGCATACGAAGACCCTTGAGCTTTTCCGGGAGGATCACAGTGAGCAAGCCACAGTCATG AAGAACAAAACACAGGAAACTTTCCAGGAGCGCTTTATGGATTATGAGCCAACTGGTACTACTCCAACGAGGACTGAACCTGACATTCCGAGCAATGGGA CAATCGAATCGCTGAGAGCAATGCCAATGGAAGCTTTGGTCGAGGAGTTTCGAGAGAACAACTCATACGAATCGTTTGAGGTGAAGAAAATCAATACATC TCTTATACCACGGCCGCCCCTTAGCCAAATCAATTAG
AA sequence Show only first row Show all	>Lus10022697 pacid=23178595 polypeptide=Lus10022697 locus=Lus10022697.g ID=Lus10022697.BGIv1.0 annot-version=v1.0 MSGRHEKGVNVQVLLRCRPFSDDELRSNAPQVVTCNDYQREVAISQNIAGKQIDRVFTFDKVFGPSAQQRDLYEQAVVPIVHEVLEGFNCTIFAYGQTGT GKTYTMEGECRRAKSGINGELPQEAGVIPRAVKQIFDTLERPVNNKHSKVYAAREKNGVYIPKERYYQEESERKAMADQIEQMGVTIETHQKQLEELQEK YDIQVRHCSDLSCKLSASERNLLETSKLLSNTEEELKKCRYALNERDFVISEQNKAGREDNLQSKNRSLVNSFQAELSQQIGSLRSIVANSMSQQDEHLQ CVSKLCHSFLATHDKRFSSSGEQTKQISNYTDEFFGKLTDQSKTIKNHVTRVDDTQMSNIADFQRAYEEQTKADALKLVANISNLVSHHIVRQKELVCTM VEKYLLQFILSFIFRMVVINVPQVNARLDGFREAATERRKFLDGQVSSLENVTTEAKRKWQEFCVQVESEAKDGADYSTAKHCRMEMLLQQSVSNAESAF KHYKKTNDSVNEMCTKHVKSVASLVRDSSDSIEQHVSEIDSAKTAAEQDVAMNNEDALRHVADMSAKERDLVSGIVTAVEAHTKTLELFREDHSEQATVM KNKTQETFQERFMDYEPTGTTPTRTEPDIPSNGTIESLRAMPMEALVEEFRENNSYESFEVKKINTSLIPRPPLSQIN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36200			P-loop containing nucleoside t...		Lus10022697 [exp]	0	1
AT4G02800			unknown protein		Lus10000658 [exp]	7.2	0.9402
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10024879 [exp]	7.7	0.9294
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	12.5	0.9379
AT3G15550			unknown protein		Lus10025757 [exp]	13.3	0.9373
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	13.9	0.9371
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	16.7	0.9363
AT5G39900			Small GTP-binding protein (.1)		Lus10007250 [exp]	19.3	0.8916
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10039129 [exp]	19.9	0.9349
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	23.3	0.9138
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10034628 [exp]	24.4	0.8348

Compare expression of checked genes

Lus10022697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.