Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52610 378 / 2e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014215 [exp] 865 / 0 AT3G52610 372 / 3e-125 unknown protein Lus10014214 [exp] 421 / 6e-144 AT3G52610 484 / 5e-169 unknown protein Lus10022699 [exp] 338 / 2e-113 AT3G52610 362 / 5e-123 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G078000 [exp] 522 / 0 AT3G52610 423 / 7e-145 unknown protein Potri.006G210900 [exp] 432 / 2e-148 AT3G52610 504 / 1e-176 unknown protein Potri.006G210800 [exp] 205 / 5e-64 AT3G52610 206 / 2e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022698 pacid=23178530 polypeptide=Lus10022698 locus=Lus10022698.g ID=Lus10022698.BGIv1.0 annot-version=v1.0 ATGGAACCAGTAAACGGAAGCAGAGTACTCGGCGGCACAGAACAGAGCTGGTCCAAAGCAATCCCCGGAGGAACAGGGACCGCCGTCTTAGCAATTCTAA CCACCAAATCTCCAAACTCCACCGCTCTCCAAACCGCCCTCCACGCCCTCCAAACCAACCACCCCATTCTCCGGTCAAGAATCAACAATTCCTCATCTCC TGCAACAATCATTACCGCCGACAAGCCTTTCGTCACTGTCACAGAGTACAACCTCTTGCACACCCTCAACATCCTCGAATCCAACGACAACAAATTCAAT CCCTCCCCTTTGCAGTTGATCCTCGAACACGAGCTTAACAACAACCAGTTCAATTCTTCTCCTAACGATGATCTCGACGACATGTTGTTTGCAACGACGT ATGCTCTGCCTCAGGAGAAATGGGCGATGGTGCTCCGGCTCCACGTGGCGGCCTGCGATAGGACTACGGCTGTTTCCTTGCTGAAGGAACTGCTTGCGTT GGTGGGTCCGAAGGATCAAGAGGAGACGACGTCGTCGTGGGTGGAGGGGAGCGGGGGAGTTGGGTTGGGAATTGAGAAGCTGATTCCGGGCGGGAAGAAC AAGAAATCGATGTGGGCGAGGGGGGTTAACATGGTTGGTTACTCGCTCGGTTCGTTTCGGTTAACCAACCTGAAGTTAGTCGATGCCAAGTCGCCTAGGC GGTCTCGGGTTGTGAGACTCCAGCTCGATTGTGATCAGACCCGAAAACTTCTTGATGGTTGTGAGAAGGCGGGGATCAAGTTGTGCGGAGCATTGACGGC GGCCGGAATTGTAGCGGCAGCACACAGCATGAGAAAGAACAACGTTAACTATAACAACGAAGCTGATAATAAACAGAGGAAATTCGGAATCGTGACGTTG ACTGACTGTAGACCCATCCTGGAACCGCCTCTTTCCCCACACCATTTTGGATTTTACCATTCCGCCATCATGAACACCCACGTCCTCCAAACGACGCCGC ACAGGCTATTTGAAGTGGCGCAGAAAGCTTACGCAGCATTCAAATCCTACAAGGACAGTCACAGGCAGTTCACGGACATGGCGGACATCAACTTCCTGAT GACGAAGGCCCTCGATAACCCGTCTCTGACTCCTTCTTCGGCCCTGAGGACCTCACTGATGTCGGTTTTCGAGGACACTGTCGTCGACAACTCGTCCAGC TCTGGGTCGGATAGAGACGAGGTAGGGGTGGTGGACTACATGGGCTGCGCCTCCGTGCATGGGATCGGACCCTCGATCGCCGTGTTCGACACGGTGAGGG AAGGGAAGCTGGATTGCGTGTGTGTTTACCCGTCGCCGTTGCATTCGAGGGAGCAGATGGAGGAGTTCGTGGAGAAGATGAAGAATGTTCTGATTAGTGG GTGA
AA sequence Show only first row Show all	>Lus10022698 pacid=23178530 polypeptide=Lus10022698 locus=Lus10022698.g ID=Lus10022698.BGIv1.0 annot-version=v1.0 MEPVNGSRVLGGTEQSWSKAIPGGTGTAVLAILTTKSPNSTALQTALHALQTNHPILRSRINNSSSPATIITADKPFVTVTEYNLLHTLNILESNDNKFN PSPLQLILEHELNNNQFNSSPNDDLDDMLFATTYALPQEKWAMVLRLHVAACDRTTAVSLLKELLALVGPKDQEETTSSWVEGSGGVGLGIEKLIPGGKN KKSMWARGVNMVGYSLGSFRLTNLKLVDAKSPRRSRVVRLQLDCDQTRKLLDGCEKAGIKLCGALTAAGIVAAAHSMRKNNVNYNNEADNKQRKFGIVTL TDCRPILEPPLSPHHFGFYHSAIMNTHVLQTTPHRLFEVAQKAYAAFKSYKDSHRQFTDMADINFLMTKALDNPSLTPSSALRTSLMSVFEDTVVDNSSS SGSDRDEVGVVDYMGCASVHGIGPSIAVFDTVREGKLDCVCVYPSPLHSREQMEEFVEKMKNVLISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52610			unknown protein		Lus10022698 [exp]	0	1
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10022427 [exp]	1.0	0.9996
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	1.4	0.9983
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Lus10008374 [exp]	1.7	0.9951
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10035793 [exp]	6.3	0.9884
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10020268 [exp]	7.5	0.9542
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	9.8	0.9931
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	10.7	0.9918
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	12.0	0.9935
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	13.4	0.9770
					Lus10038594 [exp]	13.4	0.9935

Compare expression of checked genes

Lus10022698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.