Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52610 357 / 9e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014214 [exp] 672 / 0 AT3G52610 484 / 5e-169 unknown protein Lus10022698 [exp] 338 / 1e-113 AT3G52610 380 / 3e-128 unknown protein Lus10014215 [exp] 333 / 1e-111 AT3G52610 372 / 3e-125 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210900 [exp] 442 / 2e-154 AT3G52610 504 / 1e-176 unknown protein Potri.016G078000 [exp] 382 / 6e-131 AT3G52610 423 / 7e-145 unknown protein Potri.006G210800 [exp] 209 / 5e-67 AT3G52610 206 / 2e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022699 pacid=23178610 polypeptide=Lus10022699 locus=Lus10022699.g ID=Lus10022699.BGIv1.0 annot-version=v1.0 ATGAACGATAATCCGTGGACCGATCACGGAAACGACGAGGATAAGGAGCTGTTCTTCGTGAGCTTGTACTCGTTGAGCGAGGCGCGGTGGATGCTGGCGA TACGGCTCCACACGGGGGCGTGCGACCGGTCATCGGCGGTTGCGCTGCTGGCGGAGCTAATGGAGTTGATCGGCGGTGGTGGAGTCTGCGGAGAGAAGGA AGAGATTCAGCAGAGCGAGATCGGATTGGGGATCGAGGAGTACATTCCTCGAGGGAAGGCGAACAAGCCGTTCTGGGCGCGTGGGAAGGACATGCTTGGA TATTCGCTGAATGCACTCAGGACGTCGAATTTGGAGTTCGTCGACCCCGCCGGCGAGCCTCGCTGCTCGCGGATGGTCCGCCTGGTGATGACCTCCGACG ACACCGCTAAGCTCGTTGCTGGATGCAAGTCAAGGAACATAAAGCTTTGTGCAGCATTAGCAGCTGCATCCATGATTGCAGCAAGATCATCCAAAGACCT CCCTGATAATCTCCAATACGAGAAGTATTCGATCGCGACCCTCCTCGATTGTCGATCTATTCTGGACCCTGTCCTCAAAATCCACCACCTCGGGTTCTAC CACTCTGCAATCACGAATTCCCACGACTTGAACATGGAAGACGAGCTATGGGAGCTGGCAGAGAGGTGCCACGCTTCCTTCGCCAATGCCAAGAACAACA ACAAGCACTTCAGCGACATGTCCGACCTCAACTTCCTCATGGTTAAGGCCGTCGAGAATCCCGGTCTGACCCCATCGTCAGCCCAGAGGACCGCGCTGGT GTCAGTTTTCGAGGAAGCGATGATTGACGACTCCTCAAAAGACCTGCATTCACAGATTGGCGTGGAGGATTTCATAGGGTGTGCTTCGGTCCATAACGTG GGGCCTTCGCTAGCGATCTTCGACACGATTAGGGACGGGAAATTGGATTGCGCTTGCGTGTACCCCTCGCCGTTGCATTCCAGGGAGCAGATGCAGAGGT TTGTTGATGATATGAAGCGCATTCTTGTTGGTGGTTTGTGTGAGAGTTGA
AA sequence Show only first row Show all	>Lus10022699 pacid=23178610 polypeptide=Lus10022699 locus=Lus10022699.g ID=Lus10022699.BGIv1.0 annot-version=v1.0 MNDNPWTDHGNDEDKELFFVSLYSLSEARWMLAIRLHTGACDRSSAVALLAELMELIGGGGVCGEKEEIQQSEIGLGIEEYIPRGKANKPFWARGKDMLG YSLNALRTSNLEFVDPAGEPRCSRMVRLVMTSDDTAKLVAGCKSRNIKLCAALAAASMIAARSSKDLPDNLQYEKYSIATLLDCRSILDPVLKIHHLGFY HSAITNSHDLNMEDELWELAERCHASFANAKNNNKHFSDMSDLNFLMVKAVENPGLTPSSAQRTALVSVFEEAMIDDSSKDLHSQIGVEDFIGCASVHNV GPSLAIFDTIRDGKLDCACVYPSPLHSREQMQRFVDDMKRILVGGLCES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52610			unknown protein		Lus10022699 [exp]	0	1
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10022433 [exp]	3.5	0.7922
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	5.7	0.8148
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10023726 [exp]	5.7	0.8053
AT3G21400			unknown protein		Lus10006520 [exp]	17.0	0.7896
AT5G60190			Cysteine proteinases superfami...		Lus10036134 [exp]	19.4	0.7370
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	20.2	0.7865
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	20.3	0.7724
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	24.4	0.7862
AT5G07590			Transducin/WD40 repeat-like su...		Lus10042992 [exp]	27.2	0.7533
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	27.9	0.7625

Compare expression of checked genes

Lus10022699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.