Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37570 548 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G44880 366 / 2e-120 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 355 / 9e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 340 / 3e-108 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 334 / 9e-107 SLO1 SLOW GROWTH 1 (.1) AT3G12770 333 / 4e-106 MEF22 mitochondrial editing factor 22 (.1) AT4G02750 327 / 4e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 327 / 4e-103 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 319 / 2e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 318 / 5e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014212 [exp] 1058 / 0 AT5G37570 561 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10028907 [exp] 355 / 6e-116 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 355 / 4e-114 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 343 / 3e-110 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003422 [exp] 334 / 1e-107 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019797 [exp] 331 / 2e-106 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 330 / 7e-106 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 325 / 3e-105 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 325 / 3e-105 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207500 [exp] 704 / 0 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G116100 [exp] 380 / 6e-126 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 370 / 3e-122 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 368 / 1e-120 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 362 / 1e-117 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 356 / 2e-114 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G046200 [exp] 348 / 5e-113 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G128900 [exp] 350 / 1e-112 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 332 / 3e-107 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.018G040100 [exp] 336 / 9e-107 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022701 pacid=23178517 polypeptide=Lus10022701 locus=Lus10022701.g ID=Lus10022701.BGIv1.0 annot-version=v1.0 ATGCCTTTGAGGTCCGCTTCCGGTCCTCCTTCGATCCCTCTTCTGATCAAATCCTGCAAAAACCTAGTCCACCTTTACCAGCTCCACGCTCACATTATCC GCAGAGGCCTGGACCAAGACCACTTCATCGTTTCTCACTTGCTGACCCTGTCGACTTCGTTATCCTACTCAACCTCTGTTTTCAACAGCTTGATTGCACC TTCCACTTTCCTCTACAACGTCCTGTTGAAAGTCTACTCGAAGAATCGCCACTTCAAGGAGGCGTTTTTGCTCTATTTGCAGATGAAGCGGAGCGATCAT TGCGCCTCGCCGGATAAGTACACTCTCTCTTCTCTAGTTAGCTCCTGTTCGCGTGAATGTAGGTTTAGAGAAGGTAGGATTGTTCATGGATCGACGATTA GGTATGGGGTTACGGGTGATATGTTTGTCGGTTCGGGATTGATTGACTTTTACGGGAAATGCCAGGAGATGGTTAGTGCGGATAAGGTGTTTGATGAAAT GCCTGAGAGAAATGTTGTCTGTTGGACTGCGCTGGTTGTTGGATATGCGAATATGGGGGACTTGGAAAATACCAGGAGAGTGTTTAACCAAATGCCGGTC AGGAATCAGGTTTCATGGAATGCTATGATCACCGGGTTGGTGAAAGCCGGAGATATGGTCGGTGCGAGGAAGGTGTTTGATGAAATGCCGCAAAGGACTG TGTTTGACTACACGGTTTTGATCGACGGATACGCCAAGGATGGAGATATGGCGTCGGCAATGGCATTGTTCAAATCTTCTCCGGAGAATGATATCGTTTC ATGGTCTGCATTGATACAAGGGTTTGCTCAGAACGGTTTGCCAAACCAGGCTGTGAAGATGTTTACAGAAATGGAGTTAGCGGGTATCAAACCCGACGAG TTCGTTATGGTAAGCTTGATGTCAGCTTGTTCGCAAATAGGAAGCTTGAAAATGGCAAATTGGATTAACCACTATCTGAAAGAGAGCTCGGTTGATGTTC GTCAAAATCACGTTATGTCAGCTCTCATTGGTATGAATGCTCGATGCGGGAACATGTCGAGAGCAGAAACATTGTTCGAGAAAATGCCTCAACGAAATCT TGTTGCCTATTGTTCTATGATAAAAGGGTATTCAATGTCCGGACGAGGAGATCAAGCTCTCAAGCTATTCAATAAGATGTTGGACGAGGGGTTGGTTCCG GACAAAGTGGCATTTACCGTGATTTTATCAGCGTGTAGTCGAGCTGGCCTTGTGGAAGAGGGTTGGCATTATTTTACCACTCTCAGAGACGAGTATTCCT TAGTTCCCTCTCCTGACCATTATGCGTGTATGGTGTATCTTCTTAGTATGGAAGGACGTTTAGAAGCTGCGCGCGAGCTTCTGGTGTCGTCCCCTTTTGA GCCTCATGCTTGTGCGTGGGGTGCGCTTCTCGGCGGGTGTAAGCAGTATGCTAACATCAAACTAGCTGAGGATGCCGCCGCCAAACTGTTTGATCTCGAA CCTCGAAACGCGGCTAATTACGTGTTGTTATCTGATATTTATGCAGCGTCCGATCGTTGGTTGGATGTTTCTCTTGTTAGGGAGAAGTTGAAAGAGAGAG GGCTTAGGAAATTGCCTGGTTGCAGTTGGGTATAG
AA sequence Show only first row Show all	>Lus10022701 pacid=23178517 polypeptide=Lus10022701 locus=Lus10022701.g ID=Lus10022701.BGIv1.0 annot-version=v1.0 MPLRSASGPPSIPLLIKSCKNLVHLYQLHAHIIRRGLDQDHFIVSHLLTLSTSLSYSTSVFNSLIAPSTFLYNVLLKVYSKNRHFKEAFLLYLQMKRSDH CASPDKYTLSSLVSSCSRECRFREGRIVHGSTIRYGVTGDMFVGSGLIDFYGKCQEMVSADKVFDEMPERNVVCWTALVVGYANMGDLENTRRVFNQMPV RNQVSWNAMITGLVKAGDMVGARKVFDEMPQRTVFDYTVLIDGYAKDGDMASAMALFKSSPENDIVSWSALIQGFAQNGLPNQAVKMFTEMELAGIKPDE FVMVSLMSACSQIGSLKMANWINHYLKESSVDVRQNHVMSALIGMNARCGNMSRAETLFEKMPQRNLVAYCSMIKGYSMSGRGDQALKLFNKMLDEGLVP DKVAFTVILSACSRAGLVEEGWHYFTTLRDEYSLVPSPDHYACMVYLLSMEGRLEAARELLVSSPFEPHACAWGALLGGCKQYANIKLAEDAAAKLFDLE PRNAANYVLLSDIYAASDRWLDVSLVREKLKERGLRKLPGCSWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	0	1
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	1.0	0.9009
AT5G24320			Transducin/WD40 repeat-like su...		Lus10007783 [exp]	2.6	0.8441
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	3.0	0.8342
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	5.5	0.8645
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016663 [exp]	5.7	0.8780
AT1G71060			Tetratricopeptide repeat (TPR)...		Lus10001633 [exp]	6.0	0.8512
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10015023 [exp]	7.3	0.8479
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	9.2	0.8085
AT5G65920			ARM repeat superfamily protein...		Lus10005500 [exp]	15.5	0.8094
AT3G46920			Protein kinase superfamily pro...		Lus10040006 [exp]	16.1	0.8492

Compare expression of checked genes

Lus10022701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.