Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11460 618 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 406 / 3e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 386 / 3e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 368 / 8e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 358 / 9e-116 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 359 / 1e-115 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 359 / 5e-114 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 357 / 2e-113 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 348 / 9e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 347 / 4e-111 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014211 [exp] 793 / 0 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 393 / 8e-129 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 390 / 2e-128 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 379 / 1e-123 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035815 [exp] 381 / 3e-123 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 374 / 1e-121 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 371 / 3e-120 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 367 / 4e-120 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 365 / 3e-119 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211400 [exp] 702 / 0 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 411 / 9e-137 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 402 / 2e-132 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 398 / 4e-130 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 389 / 5e-128 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 387 / 6e-127 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 376 / 1e-123 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 379 / 2e-123 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.002G220300 [exp] 368 / 2e-119 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 366 / 2e-118 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022702 pacid=23178602 polypeptide=Lus10022702 locus=Lus10022702.g ID=Lus10022702.BGIv1.0 annot-version=v1.0 ATGAGCGCCATCGCCGCGAAGCTCAATCTGTGGAACAACCAGTTACGGGAGCTAGCAAACAAATCTCTCTTCTCAGAAGCATTGGATTTCTACCTCCGAA TGCTTCGTTCCGGCGCGAAGCCGAACTCGGTCAGTTTCACCTTCGTGCTCAGTTCATCTGCTTTCCTCTCATTCCCCTTCGCCGGGAAACAACTCCATAG CCAAGTCATCAGAGCAGGGTGCTTGGCGGATGCCTTTGTTCAGACTTCTCTGGTTTCTATGTACTCCAAATGCGGGTTTGTGGATATTGCACGCAAGGTG TTCGACGAAAATTCTGAGTCGAAGTTACTCACTGCTTGCTACAATGCTTTGATTGCTGGATATTCCTTGAATCTCAGAGTGAAAGATGCTGTATCTCTTT TCGGTGAAATGAGGGAACTCGCAGTTCCGATCGATGGAGTGACCGTGCTCAGTTTGGTTCCAGTTTGTGGAGTTTCGGCTAACGTAGGACTCAGGATTTG TGTACATTGTTGTTGTGTGAAGTTAGGGTTGGATTCGGACTATGCAGTTGGGAGCGGATTGCTGTCTATGTATTCAAGATGTGGAGAAATCGAAAGCTCA CGCCAACTGTTCAATGAAATGCCTGAGAGAGGGTTGGTTACTTGGAACGCTATGATCAATGGCTATGCTCAGAATGGACTTGGTAAGGATGCGTTGGAGC TCTACAGAGAGATGATGGATTCGAGCGGGATTTTCCCCAACGCTGTAACGCTCGTTGGCGTTCTTTCGTCCTGTGCGAATCTCGGAGCAATTGACTTAGG TACGGAGGTCGAGAGGCGAATCCACGCTTGTGGTTTTGATTCGGATCCATTTCTGAACAGTGGTTTGATCAATATGTATGCTAGGTGTGGCGATTTAGCG AAAGCCAGAGAGATTTTTTATAGTCTTCCGGCGAAGAACTTGGTTTCGTGGACTGCAATTCTAGGAGGCTATGGAATGCACGGACAGGGAGAGATTGCAG TGAAACTCTTCGACGACATGATTAGATCCGGTATGAGACCGGACCGAACAGCCTTTCTAAATGTTCTGTCTGCTTGTGGCCATGCCGGTCTGACAGAGAA AGGGTTGCAGTATTTCGATACCATGCAGCGGGAGTACCGGTTACGTCCTGGTCCGGAGCATTACTCTTGTGTGGTGGATCTTTTAGGGCGAGCTGGCCGA TTAGACGAGGCTTATGAGCTCATCGAGTCGATGGAAACAAAACCGGACGGTTCAGTTTGGGGAGCTCTTCTAGGTGCCTGCAGAATACACAGAAATGCCG AGTTGGCAGAGATGGCATTTAAAAAGGTTATAGAGTTCGAACCTACAAATATCGGCTACTATGTACTGTTATCTAATATTTACAACGATGCTGGGAATTC GGCGGGCGTTTCGAGGATCAGACTGATGATGAGAGAACGAAAGCTGAAGAAGGATCCGGGGTGCAGTTCTGTTGAATTCGAAGGCAAAGTTCACCTCTTT CTTTCTGGGGATAGAAGCCATCAGCAATCGAAACAGATATATGAAATTTCGGACGAGCTGGAAGGTAAAGTAAAGGAATTTGATTCTGCAATTGCAAAAT CAAATTCTTTTACTTTCCCAGATTGA
AA sequence Show only first row Show all	>Lus10022702 pacid=23178602 polypeptide=Lus10022702 locus=Lus10022702.g ID=Lus10022702.BGIv1.0 annot-version=v1.0 MSAIAAKLNLWNNQLRELANKSLFSEALDFYLRMLRSGAKPNSVSFTFVLSSSAFLSFPFAGKQLHSQVIRAGCLADAFVQTSLVSMYSKCGFVDIARKV FDENSESKLLTACYNALIAGYSLNLRVKDAVSLFGEMRELAVPIDGVTVLSLVPVCGVSANVGLRICVHCCCVKLGLDSDYAVGSGLLSMYSRCGEIESS RQLFNEMPERGLVTWNAMINGYAQNGLGKDALELYREMMDSSGIFPNAVTLVGVLSSCANLGAIDLGTEVERRIHACGFDSDPFLNSGLINMYARCGDLA KAREIFYSLPAKNLVSWTAILGGYGMHGQGEIAVKLFDDMIRSGMRPDRTAFLNVLSACGHAGLTEKGLQYFDTMQREYRLRPGPEHYSCVVDLLGRAGR LDEAYELIESMETKPDGSVWGALLGACRIHRNAELAEMAFKKVIEFEPTNIGYYVLLSNIYNDAGNSAGVSRIRLMMRERKLKKDPGCSSVEFEGKVHLF LSGDRSHQQSKQIYEISDELEGKVKEFDSAIAKSNSFTFPD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	0	1
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	1.4	0.8902
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	2.0	0.8393
AT4G19191			Tetratricopeptide repeat (TPR)...		Lus10031028 [exp]	2.4	0.8295
AT5G66360		DIM1B	adenosine dimethyl transferase...		Lus10041797 [exp]	3.0	0.8014
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	3.5	0.8251
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	3.9	0.8142
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	6.7	0.7772
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	10.1	0.8084
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	10.2	0.8030
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	10.6	0.7499

Compare expression of checked genes

Lus10022702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.